Motif IL_49607.2 Version IL_49607.2 of this group appears in releases 3.3 to 3.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5UNE_005 | 5UNE | 0.6219 | 0 | tSH-tHW | B+A | RNA (47-MER) | G | 21 | C | 22 | A | 23 | C | 24 | * | G | 21 | C | 22 | A | 23 | C | 24 | cWW | ntWH | ncWS | cWW |
| 2 | IL_4Y4O_188 | 4Y4O | 0.3760 | 1 | tSH-tHW (H) | 2A | LSU rRNA | A | 357 | U | 358 | A | 359 | G | 360 | * | C | 280 | G | 281 | A | 282 | U | 284 | cWW | tWH | tHS | cWW |
| 3 | IL_4Y4O_233 | 4Y4O | 0.1948 | 1 | tSH-tHW (H) | 2A | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | G | 1440 | * | C | 1551 | G | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 4 | IL_5J7L_297 | 5J7L | 0.0000 | 1 | tSH-tHW | DA | LSU rRNA | C | 1437 | U | 1438 | A | 1439 | U | 1440 | * | A | 1551 | A | 1552 | A | 1553 | G | 1555 | cWW | tWH | tHS | cWW |
| 5 | IL_4IOA_055 | 4IOA | 0.0919 | 1 | tSH-tHW (H) | X | LSU rRNA | C | 1451 | U | 1452 | A | 1453 | U | 1454 | * | A | 1567 | A | 1568 | A | 1569 | G | 1571 | cWW | tWH | tHS | cWW |
| 6 | IL_5U3G_001 | 5U3G | 0.1607 | 2 | tSH-tHW | B | Guanidine-I riboswitch | C | 6 | U | 7 | A | 8 | G | 9 | * | C | 30 | G | 31 | A | 32 | G | 35 | cWW | tWH | tHS | cWW |
| 7 | IL_5T83_001 | 5T83 | 0.2107 | 2 | tSH-tHW | A | Guanidine-I riboswitch | C | 12 | U | 13 | A | 14 | G | 15 | * | C | 42 | A | 43 | A | 44 | G | 47 | cWW | tWH | tHS | cWW |
| 8 | IL_3NDB_007 | 3NDB | 0.2598 | 3 | tSH-tHW | M | SRP RNA | G | 223 | U | 224 | A | 225 | G | 226 | * | C | 192 | G | 193 | A | 194 | C | 198 | cWW | tWH | tHS | cWW |
| 9 | IL_5WTI_001 | 5WTI | 0.9500 | 2 | Other IL | B | RNA (123-MER) | C | 25 | A | 26 | A | 27 | C | 28 | * | G | 0 | C | 1 | G | 2 | G | 5 | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCAC*GCAC | 1 |
| AUAG*CGAAU | 1 |
| CUAG*CGAAG | 1 |
| CUAU*AAAUG | 1 |
| CUAU*AAACG | 1 |
| CUAG*CGAGAG | 1 |
| CUAG*CAAGAG | 1 |
| GUAG*CGAACCC | 1 |
| CAAC*GCGAGG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAA | 2 |
| CA*CA | 1 |
| UA*AAU | 1 |
| UA*AAC | 1 |
| UA*GAGA | 1 |
| UA*AAGA | 1 |
| UA*GAACC | 1 |
| AA*CGAG | 1 |
- Annotations
-
- tSH-tHW (5)
- tSH-tHW (H) (3)
- Other IL (1)
- Basepair signature
- cWW-tWH-tHS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.42 | Max 1.01
Coloring options: