#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 81-82-73-64-5
1 IL_5UNE_0055UNE0.65050tSH-tHWB+ARNA (47-MER)G21C22A23C24*G21C22A23C24cWWntWHncWScWW
2 IL_4Y4O_1884Y4O0.35091tSH-tHW (H)2A LSU rRNAA357U358A359G360*C280G281A282U284cWWtWHtHScWW
3 IL_4Y4O_2334Y4O0.17491tSH-tHW (H)2A LSU rRNAC1437U1438A1439G1440*C1551G1552A1553G1555cWWtWHtHScWW
4 IL_5J7L_2975J7L0.16071tSH-tHWDA LSU rRNAC1437U1438A1439U1440*A1551A1552A1553G1555cWWtWHtHScWW
5 IL_4IOA_0554IOA0.18441tSH-tHW (H)X LSU rRNAC1451U1452A1453U1454*A1567A1568A1569G1571cWWtWHtHScWW
6 IL_5T83_0015T830.15872tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C42A43A44G47cWWtWHtHScWW
7 IL_5U3G_0015U3G0.00002tSH-tHWBGuanidine-I riboswitchC6U7A8G9*C30G31A32G35cWWtWHtHScWW
8 IL_6CK5_0016CK50.14992tSH-tHWAGuanidine-I riboswitchC12U13A14G15*C45G46A47G50cWWtWHtHScWW
9 IL_3NDB_0073NDB0.25213tSH-tHWM SRP RNAG223U224A225G226*C192G193A194C198cWWtWHtHScWW
10 IL_5WTI_0015WTI0.95352Other ILBRNA (123-MER)C25A26A27C28*G0C1G2G5cWWncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GCAC*GCAC1
AUAG*CGAAU1
CUAG*CGAAG1
CUAU*AAAUG1
CUAU*AAACG1
CUAG*CAAGAG1
CUAG*CGAGAG1
CUAG*CGAGCG1
GUAG*CGAACCC1
CAAC*GCGAGG1
Non-Watson-Crick part of the motif
SequenceCounts
UA*GAA2
CA*CA1
UA*AAU1
UA*AAC1
UA*AAGA1
UA*GAGA1
UA*GAGC1
UA*GAACC1
AA*CGAG1

Release history

Release3.73.83.93.103.11
Date2018-06-292018-07-272018-08-242018-09-212018-10-19
StatusUpdated, 1 parentExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tSH-tHW (6)
  • tSH-tHW (H) (3)
  • Other IL (1)
  • Basepair signature
    cWW-tWH-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.41 | Max 1.01
    Help

    Coloring options:

    IL_5UNE_005:IL_5UNE_005 = 0IL_5UNE_005:IL_4Y4O_188 = 0.5597IL_5UNE_005:IL_4Y4O_233 = 0.5903IL_5UNE_005:IL_5J7L_297 = 0.6219IL_5UNE_005:IL_4IOA_055 = 0.6315IL_5UNE_005:IL_5T83_001 = 0.614IL_5UNE_005:IL_5U3G_001 = 0.6505IL_5UNE_005:IL_6CK5_001 = 0.7205IL_5UNE_005:IL_3NDB_007 = 0.5893IL_5UNE_005:IL_5WTI_001 = 0.9607IL_4Y4O_188:IL_5UNE_005 = 0.5597IL_4Y4O_188:IL_4Y4O_188 = 0IL_4Y4O_188:IL_4Y4O_233 = 0.2474IL_4Y4O_188:IL_5J7L_297 = 0.376IL_4Y4O_188:IL_4IOA_055 = 0.3774IL_4Y4O_188:IL_5T83_001 = 0.4085IL_4Y4O_188:IL_5U3G_001 = 0.3509IL_4Y4O_188:IL_6CK5_001 = 0.4053IL_4Y4O_188:IL_3NDB_007 = 0.3186IL_4Y4O_188:IL_5WTI_001 = 0.9402IL_4Y4O_233:IL_5UNE_005 = 0.5903IL_4Y4O_233:IL_4Y4O_188 = 0.2474IL_4Y4O_233:IL_4Y4O_233 = 0IL_4Y4O_233:IL_5J7L_297 = 0.1948IL_4Y4O_233:IL_4IOA_055 = 0.2293IL_4Y4O_233:IL_5T83_001 = 0.2521IL_4Y4O_233:IL_5U3G_001 = 0.1749IL_4Y4O_233:IL_6CK5_001 = 0.2297IL_4Y4O_233:IL_3NDB_007 = 0.2369IL_4Y4O_233:IL_5WTI_001 = 0.9818IL_5J7L_297:IL_5UNE_005 = 0.6219IL_5J7L_297:IL_4Y4O_188 = 0.376IL_5J7L_297:IL_4Y4O_233 = 0.1948IL_5J7L_297:IL_5J7L_297 = 0IL_5J7L_297:IL_4IOA_055 = 0.0919IL_5J7L_297:IL_5T83_001 = 0.2107IL_5J7L_297:IL_5U3G_001 = 0.1607IL_5J7L_297:IL_6CK5_001 = 0.2234IL_5J7L_297:IL_3NDB_007 = 0.2598IL_5J7L_297:IL_5WTI_001 = 0.95IL_4IOA_055:IL_5UNE_005 = 0.6315IL_4IOA_055:IL_4Y4O_188 = 0.3774IL_4IOA_055:IL_4Y4O_233 = 0.2293IL_4IOA_055:IL_5J7L_297 = 0.0919IL_4IOA_055:IL_4IOA_055 = 0IL_4IOA_055:IL_5T83_001 = 0.2279IL_4IOA_055:IL_5U3G_001 = 0.1844IL_4IOA_055:IL_6CK5_001 = 0.2478IL_4IOA_055:IL_3NDB_007 = 0.2756IL_4IOA_055:IL_5WTI_001 = 0.9499IL_5T83_001:IL_5UNE_005 = 0.614IL_5T83_001:IL_4Y4O_188 = 0.4085IL_5T83_001:IL_4Y4O_233 = 0.2521IL_5T83_001:IL_5J7L_297 = 0.2107IL_5T83_001:IL_4IOA_055 = 0.2279IL_5T83_001:IL_5T83_001 = 0IL_5T83_001:IL_5U3G_001 = 0.1587IL_5T83_001:IL_6CK5_001 = 0.2079IL_5T83_001:IL_3NDB_007 = 0.2642IL_5T83_001:IL_5WTI_001 = 1.0121IL_5U3G_001:IL_5UNE_005 = 0.6505IL_5U3G_001:IL_4Y4O_188 = 0.3509IL_5U3G_001:IL_4Y4O_233 = 0.1749IL_5U3G_001:IL_5J7L_297 = 0.1607IL_5U3G_001:IL_4IOA_055 = 0.1844IL_5U3G_001:IL_5T83_001 = 0.1587IL_5U3G_001:IL_5U3G_001 = 0IL_5U3G_001:IL_6CK5_001 = 0.1499IL_5U3G_001:IL_3NDB_007 = 0.2521IL_5U3G_001:IL_5WTI_001 = 0.9535IL_6CK5_001:IL_5UNE_005 = 0.7205IL_6CK5_001:IL_4Y4O_188 = 0.4053IL_6CK5_001:IL_4Y4O_233 = 0.2297IL_6CK5_001:IL_5J7L_297 = 0.2234IL_6CK5_001:IL_4IOA_055 = 0.2478IL_6CK5_001:IL_5T83_001 = 0.2079IL_6CK5_001:IL_5U3G_001 = 0.1499IL_6CK5_001:IL_6CK5_001 = 0IL_6CK5_001:IL_3NDB_007 = 0.2597IL_6CK5_001:IL_5WTI_001 = 1.0023IL_3NDB_007:IL_5UNE_005 = 0.5893IL_3NDB_007:IL_4Y4O_188 = 0.3186IL_3NDB_007:IL_4Y4O_233 = 0.2369IL_3NDB_007:IL_5J7L_297 = 0.2598IL_3NDB_007:IL_4IOA_055 = 0.2756IL_3NDB_007:IL_5T83_001 = 0.2642IL_3NDB_007:IL_5U3G_001 = 0.2521IL_3NDB_007:IL_6CK5_001 = 0.2597IL_3NDB_007:IL_3NDB_007 = 0IL_3NDB_007:IL_5WTI_001 = 0.9502IL_5WTI_001:IL_5UNE_005 = 0.9607IL_5WTI_001:IL_4Y4O_188 = 0.9402IL_5WTI_001:IL_4Y4O_233 = 0.9818IL_5WTI_001:IL_5J7L_297 = 0.95IL_5WTI_001:IL_4IOA_055 = 0.9499IL_5WTI_001:IL_5T83_001 = 1.0121IL_5WTI_001:IL_5U3G_001 = 0.9535IL_5WTI_001:IL_6CK5_001 = 1.0023IL_5WTI_001:IL_3NDB_007 = 0.9502IL_5WTI_001:IL_5WTI_001 = 0IL_5UNE_005IL_4Y4O_188IL_4Y4O_233IL_5J7L_297IL_4IOA_055IL_5T83_001IL_5U3G_001IL_6CK5_001IL_3NDB_007IL_5WTI_001Discrepancy0.000.200.400.600.801.00
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