Motif IL_49607.4 Version IL_49607.4 of this group appears in releases 3.12 to 3.21

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_5WTI_001	5WTI	0.9535	2	Other IL	B	RNA (123-MER)	C	25	A	26	A	27	C	28	*	G	0	C	1	G	2	G	5	cWW		ncWW	cWW
2	IL_3NDB_007	3NDB	0.2521	3	tSH-tHW	M	SRP RNA	G	223	U	224	A	225	G	226	*	C	192	G	193	A	194	C	198	cWW	tWH	tHS	cWW
3	IL_6CK5_001	6CK5	0.1499	2	tSH-tHW	A	Guanidine-I riboswitch	C	12	U	13	A	14	G	15	*	C	45	G	46	A	47	G	50	cWW	tWH	tHS	cWW
4	IL_6DLR_001	6DLR	0.1344	2	tSH-tHW	A	Guanidine-I riboswitch	C	12	U	13	A	14	G	15	*	C	45	A	46	A	47	G	50	cWW	tWH	tHS	cWW
5	IL_5T83_001	5T83	0.1587	2	tSH-tHW	A	Guanidine-I riboswitch	C	12	U	13	A	14	G	15	*	C	42	A	43	A	44	G	47	cWW	tWH	tHS	cWW
6	IL_5U3G_001	5U3G	0.0000	2	tSH-tHW	B	Guanidine-I riboswitch	C	6	U	7	A	8	G	9	*	C	30	G	31	A	32	G	35	cWW	tWH	tHS	cWW
7	IL_4IOA_055	4IOA	0.1844	1	tSH-tHW (H)	X	LSU rRNA	C	1451	U	1452	A	1453	U	1454	*	A	1567	A	1568	A	1569	G	1571	cWW	tWH	tHS	cWW
8	IL_5J7L_297	5J7L	0.1607	1	tSH-tHW	DA	LSU rRNA	C	1437	U	1438	A	1439	U	1440	*	A	1551	A	1552	A	1553	G	1555	cWW	tWH	tHS	cWW
9	IL_4Y4O_233	4Y4O	0.1749	1	tSH-tHW (H)	2A	LSU rRNA	C	1437	U	1438	A	1439	G	1440	*	C	1551	G	1552	A	1553	G	1555	cWW	tWH	tHS	cWW
10	IL_4Y4O_188	4Y4O	0.3509	1	tSH-tHW (H)	2A	LSU rRNA	A	357	U	358	A	359	G	360	*	C	280	G	281	A	282	U	284	cWW	tWH	tHS	cWW
11	IL_5UNE_005	5UNE	0.6505	0	tSH-tHW	B+A	RNA (47-MER)	G	21	C	22	A	23	C	24	*	G	21	C	22	A	23	C	24	cWW	ntWH	ncWS	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAAC*GCGAGG	1
GUAG*CGAACCC	1
CUAG*CGAGCG	1
CUAG*CAAGUG	1
CUAG*CAAGAG	1
CUAG*CGAGAG	1
CUAU*AAACG	1
CUAU*AAAUG	1
CUAG*CGAAG	1
AUAG*CGAAU	1
GCAC*GCAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UA*GAA	2
AA*CGAG	1
UA*GAACC	1
UA*GAGC	1
UA*AAGU	1
UA*AAGA	1
UA*GAGA	1
UA*AAC	1
UA*AAU	1
CA*CA	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: tSH-tHW (7)
tSH-tHW (H) (3)
Other IL (1)
Basepair signature: cWW-tSH-tHW-cWW
Heat map statistics: Min 0.09 | Avg 0.40 | Max 1.01

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