Motif IL_49668.1 Version IL_49668.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 3-4 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4FNJ_003 | 4FNJ | 0.1190 | 0 | A | RNA (35-MER) | C | 8 | U | 9 | A | 10 | A | 11 | * | U | 27 | G | 28 | cWW | cSH | cWW | |
| 2 | IL_1U6B_009 | 1U6B | 0.0000 | 0 | Major groove platform with intercalated tWH | B | 197-MER | C | 147 | U | 148 | A | 149 | A | 150 | * | U | 162 | G | 163 | cWW | cSH | cWW |
| 3 | IL_4CUV_138 | 4CUV | 0.5744 | 2 | 1 | 25S RRNA | C | 3225 | A | 3226 | A | 3227 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW | ||
| 4 | IL_3U5H_132 | 3U5H | 0.7413 | 2 | 5 | 25S rRNA | C | 3225 | A | 3226 | A | 3227 | G | 3229 | * | U | 3258 | G | 3260 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUAA*UG | 2 |
| CAACG*UUG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA* | 2 |
| AAC*U | 2 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_49668.1 | Only in the parent motif |
|---|---|---|---|
| IL_42251.1 Compare | IL_4FNJ_003, IL_1U6B_009 | IL_3U5H_132, IL_4CUV_138 | IL_2QBG_043, IL_1QA6_001 |
| IL_09491.1 Compare | IL_3U5H_132 | IL_4FNJ_003, IL_4CUV_138, IL_1U6B_009 |
Children motifs
| Child motif | Common motif instances | Only in IL_49668.1 | Only in the child motif |
|---|---|---|---|
| IL_44092.1 Compare | IL_3U5H_132, IL_4CUV_138 | IL_4FNJ_003, IL_1U6B_009 | |
| IL_85010.1 Compare | IL_4FNJ_003, IL_1U6B_009 | IL_3U5H_132, IL_4CUV_138 | IL_2AW7_039, IL_3J7A_046, IL_4LCK_003 |
- Annotations
-
- (3)
- Major groove platform with intercalated tWH (1)
- Basepair signature
- cWW-L-cSH-cWW
- Heat map statistics
- Min 0.12 | Avg 0.42 | Max 0.77
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