RNA 3D Hub //

Motif IL_49767.3 Version IL_49767.3 of this group appears in releases 3.48 to 3.53

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 4 5 6break 7 8 9 10 111-112-103-94-85-86-7
1 IL_5XTM_0025XTM0.94521Other ILBRNA (47-MER)G8A9U10G11A12A14*U35A36A37C38C39cWWncWWatSHcBWcWW
2 IL_4V9F_0964V9F0.17731UAA/GAN with extra cWW0 LSU rRNAG2772G2773U2774A2775A2776G2777*C2797G2798A2799A2801C2802cWWcWWtWHtHScWW
3 IL_4WF9_1044WF90.20931UAA/GAN with extra cWWX LSU rRNAG2764A2765U2766A2767A2768G2769*U2789G2790A2791G2793C2794cWWcWWtWHtHScWW
4 IL_5J7L_3505J7L0.17471UAA/GAN with extra cWWDA LSU rRNAG2737A2738U2739A2740A2741G2742*C2762G2763A2764A2766C2767cWWcwWtWHtHScWW
5 IL_7A0S_0987A0S0.00001UAA/GAN with extra cWWX LSU rRNAG2717A2718U2719A2720A2721C2722*G2742G2743A2744G2746C2747cWWcWWtWHtHScWW
6 IL_4Y4O_2824Y4O0.08691UAA/GAN with extra cWW (H)2A LSU rRNAG2737A2738U2739A2740A2741C2742*G2762G2763A2764G2766C2767cWWcWWtWHtHScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAAC*GGAAGC2
GAUGAAA*UAACC1
GGUAAG*CGAAAC1
GAUAAG*UGAAGC1
GAUAAG*CGAAAC1
Non-Watson-Crick part of the motif
SequenceCounts
AUAA*GAAG3
AUGAA*AAC1
GUAA*GAAA1
AUAA*GAAA1

Release history

Release3.483.493.503.513.523.53
Date2021-08-182021-09-152021-10-132021-11-102021-12-082022-01-05
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UAA/GAN with extra cWW (4)
  • UAA/GAN with extra cWW (H) (1)
  • Other IL (1)
    • Basepair signature
    cWW-cWW-tWH-L-tHS-cWW
    Heat map statistics
    Min 0.09 | Avg 0.36 | Max 0.98
    Help

    Coloring options:

    IL_5XTM_002:IL_5XTM_002 = 0IL_5XTM_002:IL_4V9F_096 = 0.9448IL_5XTM_002:IL_4WF9_104 = 0.9706IL_5XTM_002:IL_5J7L_350 = 0.979IL_5XTM_002:IL_7A0S_098 = 0.9452IL_5XTM_002:IL_4Y4O_282 = 0.9491IL_4V9F_096:IL_5XTM_002 = 0.9448IL_4V9F_096:IL_4V9F_096 = 0IL_4V9F_096:IL_4WF9_104 = 0.1352IL_4V9F_096:IL_5J7L_350 = 0.1951IL_4V9F_096:IL_7A0S_098 = 0.1773IL_4V9F_096:IL_4Y4O_282 = 0.1746IL_4WF9_104:IL_5XTM_002 = 0.9706IL_4WF9_104:IL_4V9F_096 = 0.1352IL_4WF9_104:IL_4WF9_104 = 0IL_4WF9_104:IL_5J7L_350 = 0.1628IL_4WF9_104:IL_7A0S_098 = 0.2093IL_4WF9_104:IL_4Y4O_282 = 0.2157IL_5J7L_350:IL_5XTM_002 = 0.979IL_5J7L_350:IL_4V9F_096 = 0.1951IL_5J7L_350:IL_4WF9_104 = 0.1628IL_5J7L_350:IL_5J7L_350 = 0IL_5J7L_350:IL_7A0S_098 = 0.1747IL_5J7L_350:IL_4Y4O_282 = 0.2076IL_7A0S_098:IL_5XTM_002 = 0.9452IL_7A0S_098:IL_4V9F_096 = 0.1773IL_7A0S_098:IL_4WF9_104 = 0.2093IL_7A0S_098:IL_5J7L_350 = 0.1747IL_7A0S_098:IL_7A0S_098 = 0IL_7A0S_098:IL_4Y4O_282 = 0.0869IL_4Y4O_282:IL_5XTM_002 = 0.9491IL_4Y4O_282:IL_4V9F_096 = 0.1746IL_4Y4O_282:IL_4WF9_104 = 0.2157IL_4Y4O_282:IL_5J7L_350 = 0.2076IL_4Y4O_282:IL_7A0S_098 = 0.0869IL_4Y4O_282:IL_4Y4O_282 = 0IL_5XTM_002IL_4V9F_096IL_4WF9_104IL_5J7L_350IL_7A0S_098IL_4Y4O_282Discrepancy0.000.200.400.600.80
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