Motif IL_50676.5 Version IL_50676.5 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1QBP_002 | 1QBP | 0.1587 | 0 | Tandem non-canonical cWW pairs | B+A | RNA (15-mer) | U | 22 | U | 23 | C | 24 | G | 25 | * | U | 7 | U | 8 | C | 9 | G | 10 | cWW | ncWW | cWW | cWW |
| 2 | IL_1IHA_001 | 1IHA | 0.0000 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 3 | IL_1ICG_001 | 1ICG | 0.0288 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (9-mer) | U | 3 | U | 4 | C | 5 | G | 6 | * | U | 3 | U | 4 | C | 5 | G | 6 | cWW | cWW | cWW | cWW |
| 4 | IL_422D_001 | 422D | 0.1397 | 0 | Tandem non-canonical cWW pairs | A+B | RNA (12-mer) | U | 7 | U | 8 | C | 9 | G | 10 | * | U | 19 | U | 20 | C | 21 | G | 22 | cWW | cWW | cWW | cWW |
| 5 | IL_4ERD_002 | 4ERD | 0.1461 | 0 | Tandem non-canonical cWW pairs | C+D | RNA (22-mer) | U | 127 | U | 128 | C | 141 | G | 142 | * | U | 127 | U | 128 | C | 141 | G | 142 | cWW | cWW | cWW | cWW |
| 6 | IL_5FJC_004 | 5FJC | 0.8921 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 7 | IL_4AOB_004 | 4AOB | 0.9266 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 82 | A | 83 | A | 84 | A | 85 | * | U | 64 | U | 67 | G | 68 | C | 69 | cWW | cWW | ||
| 8 | IL_4KQY_006 | 4KQY | 0.9396 | 2 | Pseudoknot | A | SAM-I riboswitch | G | 106 | G | 107 | A | 108 | A | 109 | * | U | 85 | A | 88 | G | 89 | C | 90 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCG*UUCG | 5 |
| GAAA*UCCUGC | 2 |
| GGAA*UCCAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UC*UC | 5 |
| AA*CCUG | 2 |
| GA*CCAG | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Tandem non-canonical cWW pairs (5)
- Pseudoknot (3)
- Basepair signature
- cWW-cWW-cWW-cWW
- Heat map statistics
- Min 0.03 | Avg 0.50 | Max 0.98
Coloring options: