Motif IL_51247.1 Version IL_51247.1 of this group appears in releases 1.15 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-12 | 4-11 | 5-10 | 6-9 | 7-8 | 11-12 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4CUV_024 | 4CUV | 0.6367 | 2 | 1 | G | 517 | G | 518 | A | 521 | A | 522 | A | 523 | U | 524 | C | 525 | * | G | 567 | G | 568 | A | 569 | A | 570 | U | 571 | A | 572 | C | 573 | cWW | tHW | tHW | tHW | ncBW | ncWW | ||
| 2 | IL_4CUV_043 | 4CUV | 0.0000 | 0 | 1 | U | 1052 | A | 1053 | A | 1054 | A | 1055 | U | 1056 | A | 1057 | U | 1058 | * | G | 991 | A | 992 | G | 993 | G | 994 | U | 995 | A | 996 | A | 997 | cWW | tSH | tHW | cBW | cWw | ncWW | ncSH | |
| 3 | IL_4CUX_078 | 4CUX | 0.8031 | 0 | 2 | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | G | 1546 | * | C | 1565 | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | ntSH | cWw | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAAUC*GGAAUAC | 1 |
| UAAAUAU*GAGGUAA | 1 |
| GGGAUAG*CUUCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAAAU*GAAUA | 1 |
| AAAUA*AGGUA | 1 |
| GGAUA*UUCAA | 1 |
Release history
| Release | 1.15 |
|---|---|
| Date | 2014-06-20 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_51247.1 | Only in the child motif |
|---|---|---|---|
| IL_73281.1 Compare | IL_4CUV_043, IL_4CUX_078 | IL_4CUV_024 | IL_1VX6_045, IL_3U5H_040 |
| IL_92957.1 Compare | IL_4CUV_024 | IL_4CUV_043, IL_4CUX_078 |
- Annotations
-
- (3)
- Basepair signature
- cWW-tSH-tHW-L-R-R-R-L-L-cWW
- Heat map statistics
- Min 0.64 | Avg 0.51 | Max 0.84
Coloring options: