Motif IL_51287.1 Version IL_51287.1 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | break | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 1-35 | 4-34 | 8-21 | 9-22 | 11-35 | 12-32 | 14-31 | 18-19 | 18-20 | |||||||||||||||||||||||||||||||||||
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1 | IL_8C3A_485 | 8C3A | 0.0000 | 5 | 1 | LSU rRNA | C | 2454 | G | 2455 | C | 2456 | C | 2457 | G | 2458 | U | 2460 | G | 2461 | A | 2462 | A | 2463 | A | 2464 | A | 2466 | C | 2467 | A | 2469 | C | 2470 | U | 2471 | A | 2472 | C | 2473 | C | 2474 | * | G | 2429 | G | 2430 | G | 2432 | U | 2433 | A | 2434 | G | 2435 | A | 2436 | A | 2437 | A | 2439 | A | 2440 | G | 2441 | U | 2442 | G | 2443 | G | 2444 | G | 2445 | A | 2446 | G | 2447 | cWW | ncWWa | tHH | ntHH | tSs | ncSW | cWW | cWW | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CGCCGGUGAAAUACCACUACC*GGUGUAGAAUAAGUGGGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GCCGGUGAAAUACCACUAC*GUGUAGAAUAAGUGGGA | 1 |
- Annotations
-
- (1)
- Basepair signature
- cWW-tSS-L-R-L-R-L-R-L-cWW-L-R-L-R-tHH-R-L-R-L-R-R-L-R-L-R-R-L-L-R-L-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: