#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 9 10 111-112-105-86-7
1 IL_4NVV_1064NVV0.62560A23S Ribosomal RNAU2857G2858U2859A2860A2861G2862*U2875U2876G2877A2878G2879cWWtSHcWW
2 IL_2QBG_1092QBG0.33290B23S rRNAU2847G2848U2849A2850A2851G2852*U2865U2866G2867A2868G2869cWWtSHtHHcWW
3 IL_3U5H_1393U5H0.00000525S rRNAU3332G3333U3334A3335A3336G3337*C3367U3368G3369A3370G3371cWWntSHtHHcWW
4 IL_4A1B_1304A1B0.26700126S RRNAU3290G3291U3292A3293A3294G3295*C3323U3324G3325A3326G3327cWWntSHntHHcWW
5 IL_4IOA_1034IOA0.32410X LSU rRNAU2822G2823C2824A2825C2826G2827*U2840U2841C2842A2843G2844cWWtSHtHHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
UGUAAG*UUGAG2
UGUAAG*CUGAG2
UGCACG*UUCAG1
Non-Watson-Crick part of the motif
SequenceCounts
GUAA*UGA4
GCAC*UCA1

Release history

Release1.141.15
Date2014-04-272014-06-20
StatusUpdated, 1 parentExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_79083.4Only in the parent motif
IL_79083.3
Compare
IL_4A1B_130, IL_3U5H_139, IL_2QBG_109, IL_4IOA_103IL_4NVV_106IL_3V2F_106

Children motifs

Child motifCommon motif instancesOnly in IL_79083.4Only in the child motif
IL_51439.1
Compare
IL_4A1B_130, IL_3U5H_139, IL_2QBG_109IL_4NVV_106, IL_4IOA_103IL_1VX6_137, IL_4CUV_145, IL_1S72_097
IL_35558.1
Compare
IL_4IOA_103IL_4A1B_130, IL_3U5H_139, IL_4NVV_106, IL_2QBG_109IL_4QCN_107
Annotations
  • (5)
  • Basepair signature
    cWW-tSH-L-R-L-tHH-cWW
    Heat map statistics
    Min 0.16 | Avg 0.36 | Max 0.72
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