Motif IL_52024.1 Version IL_52024.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-6 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_129 | 4A1B | 0.1818 | 2 | 1 | 26S RRNA | U | 3329 | U | 3330 | C | 3331 | C | 3334 | * | G | 3286 | U | 3287 | A | 3288 | cWW | cwW | cWW | |
| 2 | IL_3U5H_138 | 3U5H | 0.0000 | 2 | 5 | 25S rRNA | U | 3373 | U | 3374 | A | 3375 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW | |
| 3 | IL_4CUV_144 | 4CUV | 0.1278 | 2 | 1 | 25S RRNA | U | 3373 | U | 3374 | A | 3375 | C | 3378 | * | G | 3328 | U | 3329 | A | 3330 | cWW | cwW | cWW | |
| 4 | IL_3OWZ_002 | 3OWZ | 0.8584 | 1 | A | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW | |
| 5 | IL_3OWZ_006 | 3OWZ | 0.8723 | 1 | B | Domain II of glycine riboswitch | C | 31 | G | 32 | A | 34 | G | 35 | * | C | 70 | A | 71 | G | 72 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAAGC*GUA | 2 |
| CGAAG*CAG | 2 |
| UUCAGC*GUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAAG*U | 2 |
| GAA*A | 2 |
| UCAG*U | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_52024.1 | Only in the parent motif |
|---|---|---|---|
| IL_25549.1 Compare | IL_4A1B_129, IL_3U5H_138, IL_4CUV_144 | IL_3OWZ_006, IL_3OWZ_002 | IL_2QBG_040, IL_4A1C_001, IL_4CUX_009, IL_1S72_085, IL_2Y9B_001, IL_4IOA_037 |
| IL_95150.7 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_4A1B_129, IL_3U5H_138, IL_4CUV_144 |
Children motifs
| Child motif | Common motif instances | Only in IL_52024.1 | Only in the child motif |
|---|---|---|---|
| IL_93635.1 Compare | IL_4A1B_129, IL_3U5H_138, IL_4CUV_144 | IL_3OWZ_006, IL_3OWZ_002 | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_4CUX_009, IL_4QCN_040, IL_4W21_096, IL_4W21_164, IL_1S72_085, IL_2Y9B_001, IL_4IOA_037 |
| IL_34637.1 Compare | IL_3OWZ_006, IL_3OWZ_002 | IL_4A1B_129, IL_3U5H_138, IL_4CUV_144 |
- Annotations
-
- (5)
- Basepair signature
- cWW-cWW-tHS-cWW
- Heat map statistics
- Min 0.06 | Avg 0.48 | Max 0.97
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