Motif IL_93635.1 Version IL_93635.1 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2Y9B_001 | 2Y9B | 0.4580 | 0 | V | HOMO SAPIENS U4A SNRNA | U | 825 | U | 826 | G | 827 | * | C | 802 | C | 803 | G | 804 | cWW | cWW | cWW | |
| 2 | IL_1S72_085 | 1S72 | 0.4924 | 2 | Isolated non-canonical cWW pair (H) | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 3 | IL_4CUV_144 | 4CUV | 0.1382 | 3 | 1 | 25S RRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW | |
| 4 | IL_3U5H_138 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW | |
| 5 | IL_4A1B_129 | 4A1B | 0.1300 | 3 | 1 | 26S RRNA | G | 3286 | U | 3287 | A | 3288 | * | U | 3329 | U | 3330 | C | 3334 | cWW | cWw | cWW | |
| 6 | IL_4W21_164 | 4W21 | 0.3790 | 3 | 5 | 28S ribosomal RNA | G | 5000 | U | 5001 | U | 5002 | * | G | 5045 | U | 5046 | C | 5050 | ncWw | |||
| 7 | IL_4CUX_009 | 4CUX | 0.4575 | 2 | 2 | 18S RRNA | A | 300 | A | 301 | U | 302 | * | A | 112 | U | 113 | U | 116 | cWW | ncWW | cWW | |
| 8 | IL_2QBG_040 | 2QBG | 0.6012 | 1 | B | 23S rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW | |
| 9 | IL_4QCN_040 | 4QCN | 0.5678 | 1 | A | 23S Ribosomal RNA | C | 1167 | G | 1168 | C | 1169 | * | G | 1077 | A | 1078 | G | 1080 | cWW | cWW | cWW | |
| 10 | IL_4IOA_037 | 4IOA | 0.5671 | 1 | Isolated non-canonical cWW pair (H) | X | LSU rRNA | C | 1132 | G | 1133 | C | 1134 | * | G | 1042 | A | 1043 | G | 1045 | cWW | cWW | cWW |
| 11 | IL_4W21_096 | 4W21 | 0.4902 | 3 | 5 | 28S ribosomal RNA | C | 2772 | G | 2773 | C | 2774 | * | G | 2542 | A | 2543 | G | 2547 | cWW | cWW | ||
| 12 | IL_4A1C_001 | 4A1C | 0.6196 | 1 | 2 | 5.8S RRNA | C | 67 | A | 68 | A | 69 | * | U | 94 | C | 95 | G | 97 | cWW | ncWS | cWW | |
| 13 | IL_3U5F_074 | 3U5F | 0.8289 | 2 | 6 | 18S rRNA | U | 1369 | U | 1372 | C | 1373 | * | G | 1352 | U | 1353 | G | 1354 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GAUG | 3 |
| GUA*UUAAGC | 2 |
| UUG*CCG | 1 |
| UUC*GUGAG | 1 |
| GUA*UUCAGC | 1 |
| GUU*GUCAGC | 1 |
| AUCGU*AAU | 1 |
| CGC*GAGUGG | 1 |
| CAA*UCAG | 1 |
| UUAUC*GUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AU | 3 |
| U*UAAG | 2 |
| U*UCAG | 2 |
| U*C | 1 |
| U*UGA | 1 |
| UCG*A | 1 |
| G*AGUG | 1 |
| A*CA | 1 |
| UAU*U | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-07 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93635.1 | Only in the parent motif |
|---|---|---|---|
| IL_27005.1 Compare | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_4CUX_009, IL_4QCN_040, IL_1S72_085, IL_2Y9B_001, IL_4IOA_037 | IL_4CUV_144, IL_4A1B_129, IL_4W21_164, IL_4W21_096, IL_3U5H_138 | IL_1VX2_058, IL_4BPP_065, IL_3U5F_067, IL_2AW7_049 |
| IL_52024.1 Compare | IL_4A1B_129, IL_3U5H_138, IL_4CUV_144 | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_4CUX_009, IL_4QCN_040, IL_4W21_096, IL_4W21_164, IL_1S72_085, IL_2Y9B_001, IL_4IOA_037 | IL_3OWZ_006, IL_3OWZ_002 |
Children motifs
This motif has no children motifs.- Annotations
-
- (11)
- Isolated non-canonical cWW pair (H) (2)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.52 | Max 0.87
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