Motif IL_52451.2 Version IL_52451.2 of this group appears in releases 3.3 to 3.7
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KR6_002 | 4KR6 | 0.9472 | 7 | D | RNA (39-MER) | U | 8 | A | 9 | U | 16 | G | 18 | * | C | 25 | A | 26 | A | 27 | G | 28 | cWW | ncWW | cWW | ||
| 2 | IL_1CSL_001 | 1CSL | 0.0450 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW | |
| 3 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | B+A | THE REV BINDING ELEMENT | G | 123 | G | 124 | A | 126 | C | 127 | * | G | 104 | G | 105 | G | 106 | C | 107 | cWW | cHW | cWW | cWW | |
| 4 | IL_4V8P_148 | 4V8P | 0.6971 | 1 | C2 | 5.8S rRNA | A | 93 | U | 94 | C | 95 | G | 97 | * | C | 67 | A | 68 | A | 69 | U | 70 | cWW | cWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC*GGGC | 2 |
| UAGUGUCCUUG*CAAG | 1 |
| AUCAG*CAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GG | 2 |
| AGUGUCCUU*AA | 1 |
| UCA*AA | 1 |
- Annotations
-
- (4)
- Basepair signature
- cWW-cWW-cWH-cWW
- Heat map statistics
- Min 0.05 | Avg 0.54 | Max 0.99
Coloring options: