Motif IL_52451.5 Version IL_52451.5 of this group appears in releases 3.19 to 3.19
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1KUQ_003 | 1KUQ | 0.6831 | 1 | Tandem non-canonical cWW pairs | B | 16S RIBOSOMAL RNA FRAGMENT | G | 26 | A | 27||A | G | 28||A | G | 30 | * | U | 39 | G | 40 | G | 41 | U | 42 | cWW | ncWW | cwW | cWW |
| 2 | IL_1DUQ_001 | 1DUQ | 0.0000 | 1 | B+A | THE REV BINDING ELEMENT | G | 123 | G | 124 | A | 126 | C | 127 | * | G | 104 | G | 105 | G | 106 | C | 107 | cWW | cHW | cWW | cWW | |
| 3 | IL_1CSL_001 | 1CSL | 0.0450 | 1 | B+A | RNA (15-mer) | G | 70 | G | 71 | A | 73 | C | 74 | * | G | 46 | G | 47 | G | 48 | C | 49 | cWW | cHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAC*GGGC | 2 |
| GAGAG*UGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUA*GG | 2 |
| AGA*GG | 1 |
Release history
| Release | 3.19 |
|---|---|
| Date | 2019-05-31 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Tandem non-canonical cWW pairs (1)
- Basepair signature
- cWW-cHW-cWW-cWW
- Heat map statistics
- Min 0.05 | Avg 0.32 | Max 0.70
Coloring options: