Motif IL_52451.9 Version IL_52451.9 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-7	3-6	4-5
1	IL_1KUQ_003	1KUQ	0.6831	1	Tandem non-canonical cWW pairs	B	16S RIBOSOMAL RNA FRAGMENT	U	39	G	40	G	41	U	42	*	G	26	A	27\|\|A	G	28\|\|A	G	30	cWW	cWw	ncWW	cWW
2	IL_1DUQ_001	1DUQ	0.0000	1		A+B	THE REV BINDING ELEMENT	G	104	G	105	G	106	C	107	*	G	123	G	124	A	126	C	127	cWW	cWW	cWH	cWW
3	IL_1CSL_001	1CSL	0.0450	1		A+B	RNA (13-mer) + RNA (15-mer)	G	46	G	47	G	48	C	49	*	G	70	G	71	A	73	C	74	cWW	cWW	cWH	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGGC*GGUAC	2
UGGU*GAGAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GG*GUA	2
GG*AGA	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (2)
Tandem non-canonical cWW pairs (1)
Basepair signature: cWW-cWW-cWH-cWW
Heat map statistics: Min 0.05 | Avg 0.32 | Max 0.70

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Coloring options: Nucleotide numbers

Motif IL_52451.9 Version IL_52451.9 of this group appears in releases 3.48 to 3.53 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_52451.9 Version IL_52451.9 of this group appears in releases 3.48 to 3.53

Download

Csv

Json