#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6break 7 8 91-92-83-75-86-7
1 IL_4V9F_0594V9F0.232510 LSU rRNAG1728A1729C1731A1732A1733C1734*G2045G2046C2047cWWncWWtHScWW
2 IL_3J9W_1303J9W0.16310BA LSU rRNAG1696A1697G1698A1699A1700C1701*G2033A2034C2035cWWtHScWW
3 IL_5FDU_0655FDU0.058001A LSU rRNAG1698A1699G1700A1701A1702C1703*G2026A2027C2028cWWtHScWW
4 IL_5J7L_3045J7L0.00000DA LSU rRNAG1651A1652G1653A1654A1655C1656*G2004A2005C2006cWWtHScWW
5 IL_4IOA_0624IOA0.04960X LSU rRNAG1668A1669G1670A1671A1672C1673*G1987A1988C1989cWWtHScWW
6 IL_3J79_0733J790.21990A LSU rRNAA2151A2152A2153A2154A2155A2156*U2640A2641U2642cWWtHScWW
7 IL_5AJ0_1625AJ00.75832A2 LSU rRNAA4586C4587A4588U4589U4590U4591*A4631A4634U4635cWWcWWtHHncWScWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAGAAC*GAC4
GAGCAAC*GGC1
AAAAAA*UAU1
ACAUUU*ACCAU1
Non-Watson-Crick part of the motif
SequenceCounts
AGAA*A4
AGCAA*G1
AAAA*A1
CAUU*CCA1

Release history

Release2.0
Date2017-04-24
StatusNew id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (7)
  • Basepair signature
    cWW-L-L-L-tHS-cWW
    Heat map statistics
    Min 0.05 | Avg 0.30 | Max 0.81
    Help

    Coloring options:

    IL_4V9F_059:IL_4V9F_059 = 0IL_4V9F_059:IL_3J9W_130 = 0.2228IL_4V9F_059:IL_5FDU_065 = 0.238IL_4V9F_059:IL_5J7L_304 = 0.2325IL_4V9F_059:IL_4IOA_062 = 0.2305IL_4V9F_059:IL_3J79_073 = 0.2953IL_4V9F_059:IL_5AJ0_162 = 0.8017IL_3J9W_130:IL_4V9F_059 = 0.2228IL_3J9W_130:IL_3J9W_130 = 0IL_3J9W_130:IL_5FDU_065 = 0.1647IL_3J9W_130:IL_5J7L_304 = 0.1631IL_3J9W_130:IL_4IOA_062 = 0.1762IL_3J9W_130:IL_3J79_073 = 0.2853IL_3J9W_130:IL_5AJ0_162 = 0.8114IL_5FDU_065:IL_4V9F_059 = 0.238IL_5FDU_065:IL_3J9W_130 = 0.1647IL_5FDU_065:IL_5FDU_065 = 0IL_5FDU_065:IL_5J7L_304 = 0.058IL_5FDU_065:IL_4IOA_062 = 0.0659IL_5FDU_065:IL_3J79_073 = 0.2343IL_5FDU_065:IL_5AJ0_162 = 0.7649IL_5J7L_304:IL_4V9F_059 = 0.2325IL_5J7L_304:IL_3J9W_130 = 0.1631IL_5J7L_304:IL_5FDU_065 = 0.058IL_5J7L_304:IL_5J7L_304 = 0IL_5J7L_304:IL_4IOA_062 = 0.0496IL_5J7L_304:IL_3J79_073 = 0.2199IL_5J7L_304:IL_5AJ0_162 = 0.7583IL_4IOA_062:IL_4V9F_059 = 0.2305IL_4IOA_062:IL_3J9W_130 = 0.1762IL_4IOA_062:IL_5FDU_065 = 0.0659IL_4IOA_062:IL_5J7L_304 = 0.0496IL_4IOA_062:IL_4IOA_062 = 0IL_4IOA_062:IL_3J79_073 = 0.2248IL_4IOA_062:IL_5AJ0_162 = 0.7566IL_3J79_073:IL_4V9F_059 = 0.2953IL_3J79_073:IL_3J9W_130 = 0.2853IL_3J79_073:IL_5FDU_065 = 0.2343IL_3J79_073:IL_5J7L_304 = 0.2199IL_3J79_073:IL_4IOA_062 = 0.2248IL_3J79_073:IL_3J79_073 = 0IL_3J79_073:IL_5AJ0_162 = 0.6489IL_5AJ0_162:IL_4V9F_059 = 0.8017IL_5AJ0_162:IL_3J9W_130 = 0.8114IL_5AJ0_162:IL_5FDU_065 = 0.7649IL_5AJ0_162:IL_5J7L_304 = 0.7583IL_5AJ0_162:IL_4IOA_062 = 0.7566IL_5AJ0_162:IL_3J79_073 = 0.6489IL_5AJ0_162:IL_5AJ0_162 = 0IL_4V9F_059IL_3J9W_130IL_5FDU_065IL_5J7L_304IL_4IOA_062IL_3J79_073IL_5AJ0_162Discrepancy0.000.200.400.600.80
    Copyright 2025 BGSU RNA group. Page generated in 0.3021 s
    Application loaded.