Motif IL_53528.1 Version IL_53528.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | break | 12 | 13 | 1-13 | 11-12 | |||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4PR6_001 | 4PR6 | 0.0000 | 0 | B | HDV RIBOZYME SELF-CLEAVED | C | 107 | A | 108 | U | 109 | G | 110 | G | 111 | U | 112 | C | 113 | C | 114 | C | 115 | A | 116 | G | 117 | * | C | 130 | G | 131 | cWW | cWW | |
| 2 | IL_3IGI_008 | 3IGI | 0.9834 | 2 | Pseudoknot | A | Group IIC intron | C | 197 | U | 198 | U | 199 | U | 200 | C | 201 | U | 202 | G | 203 | C | 204 | C | 205 | A | 208 | G | 209 | * | U | 168 | G | 169 | cWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGGUCCCAG*CG | 1 |
| CUUUCUGCCAAAG*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGGUCCCA* | 1 |
| UUUCUGCCAAA* | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot (1)
- (1)
- Basepair signature
- cWW-L-L-L-L-L-L-L-L-L-cWW
- Heat map statistics
- Min 0.98 | Avg 0.49 | Max 0.98
Coloring options: