#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3U5F_0933U5F0.94420618S rRNAU1688A1689G1690*C1711A1712G1713ncWWncWW
2 IL_3U5H_0853U5H0.92904525S rRNAC2333U2334U2336*A1901G1902G1906cWWcWW
3 IL_4A1B_0814A1B0.93034126S RRNAC2328U2329U2331*A1925G1926G1930cWWcWW
4 IL_4CUV_0844CUV0.92374125S RRNAC2333U2334U2336*A1901G1902G1906cWWcWW
5 IL_1VW3_0491VW30.88804A21S ribosomal RNAC1890U1891U1893*A1621C1622G1626cWWcWW
6 IL_4QCN_0634QCN0.90984A23S Ribosomal RNAC2012U2013U2015*A1716C1717G1721cWWcWW
7 IL_1S72_0621S720.85844Intercalated tWH (H)0 LSU rRNAC2031U2032U2034*A1747U1748G1752cWWcWW
8 IL_2QBG_0652QBG0.85084B23S rRNAC1990U1991U1993*A1669C1670G1674cWWcWW
9 IL_4KYY_0024KYY0.68120Isolated non-canonical cWW pairA+BRNA 17-merU8U9G10*U8U9G10cWWcWW
10 IL_1VW3_0351VW30.27701A21S ribosomal RNAA1280A1282G1283*C1230A1231U1232cWWcSWcWW
11 IL_2QBG_0452QBG0.10201B23S rRNAA1247U1249G1250*C1196G1197U1198cWWcSWcWW
12 IL_4QCN_0414QCN0.00001A23S Ribosomal RNAA1293U1295G1296*C1241G1242U1243cWWcSWcWW
13 IL_4IOA_0434IOA0.12031Isolated cWS basepair (H)X LSU rRNAA1260U1262G1263*C1210G1211U1212cWWcSWcWW
14 IL_1VX6_0631VX60.11371A28S ribosomal RNAA1577U1579G1580*C1525G1526U1527cWWcSWcWW
15 IL_4CUV_0644CUV0.17221125S RRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
16 IL_1S72_0461S720.16111Isolated cWS basepair (H)0 LSU rRNAG1351C1353G1354*C1301G1302C1303cWWcSWcWW
17 IL_3U5H_0623U5H0.19941525S rRNAA1428U1430G1431*C1376G1377U1378cWWcSWcWW
18 IL_4TS2_0034TS20.30620Isolated cWS basepairX+YSpinach aptamer RNA, bimolecular constructA17U18G19*C80G81U82cWWncSWcWW
19 IL_4QCN_0304QCN0.29500A23S Ribosomal RNAA917U918A919*U951G952U953cWWncSWcWW
20 IL_3U5H_0523U5H0.35230525S rRNAU1123U1124U1125*A1133G1134A1135cWWncSWcWW
21 IL_1VW3_0701VW30.83081A21S ribosomal RNAU2437U2439G2440*C2608G2609A2610ncWWcWW
22 IL_3LOA_0033LOA0.81521Decoding loop with one bulged AB+ARNA (23-mer)G1491A1493G1494*C1407A1408C1409cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
AGUG*CGU6
CUGU*AGUCGG3
UAG*CAG1
CUGU*ACUCGG1
CUGU*ACUCUG1
CUGU*AUUCGG1
CUGU*ACUAGG1
UUG*UUG1
AUAG*CAU1
GACG*CGC1
AUG*CGU1
AUA*UGU1
UUU*AGA1
UAUG*CGA1
GAAG*CAC1
Non-Watson-Crick part of the motif
SequenceCounts
GU*G6
UG*GUCG3
U*G3
A*A1
UG*CUCG1
UG*CUCU1
UG*UUCG1
UG*CUAG1
U*U1
UA*A1
AC*G1
AU*G1
AA*A1

Release history

Release1.17
Date2014-09-04
Status> 2 parents

Parent motifs

Parent motifCommon motif instancesOnly in IL_53587.1Only in the parent motif
IL_67813.2
Compare
IL_1S72_046, IL_3U5H_052, IL_2QBG_045, IL_3U5F_093, IL_4IOA_043, IL_3U5H_062, IL_4CUV_064, IL_3LOA_003, IL_1VW3_035, IL_1VW3_070IL_4CUV_084, IL_4KYY_002, IL_4QCN_041, IL_4TS2_003, IL_1VW3_049, IL_1VX6_063, IL_2QBG_065, IL_4QCN_063, IL_3U5H_085, IL_4QCN_030, IL_1S72_062, IL_4A1B_081IL_2AW7_049, IL_3U5F_067, IL_4NVV_044, IL_2QBG_085, IL_4BPP_065, IL_3U5F_065, IL_4NVV_032, IL_1FJG_041, IL_1O9M_003
IL_83000.1
Compare
IL_1VW3_049, IL_1S72_062, IL_2QBG_065, IL_4KYY_002IL_1S72_046, IL_4CUV_084, IL_4QCN_030, IL_2QBG_045, IL_4TS2_003, IL_3U5F_093, IL_4IOA_043, IL_4QCN_041, IL_4CUV_064, IL_1VX6_063, IL_4QCN_063, IL_3U5H_062, IL_3U5H_085, IL_1VW3_035, IL_3LOA_003, IL_3U5H_052, IL_1VW3_070, IL_4A1B_081IL_4CUV_026, IL_4CUV_020, IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_4IOA_010, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_2O3V_001, IL_4IOA_078, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_4CUX_069, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_4KNQ_001, IL_4KNQ_002, IL_4KNQ_004, IL_4KNQ_005, IL_157D_002, IL_157D_001, IL_4CUV_139, IL_1ZH5_001, IL_4CUV_133, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_4CUX_083, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4CUX_089, IL_4CUV_156, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3GLP_001, IL_4BPP_056, IL_3BNL_004, IL_4CUX_015, IL_3U5F_015, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_3U5H_017, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_4BPP_038, IL_1VW3_009, IL_3U5H_008, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_4CUV_032, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_3U5F_023, IL_4JK0_002, IL_2O3V_004, IL_4NVV_067, IL_4JK0_005, IL_4CUX_003, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4CUV_074, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_4K31_004, IL_4IOA_109, IL_4IOA_025, IL_4NVV_043, IL_4KYY_001, IL_4KYY_003, IL_4NGF_002, IL_4NVV_055, IL_4CUX_034, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_4JK0_004, IL_3U5F_036, IL_3U5H_028, IL_4CUV_008, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_1VW3_068, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_1MFQ_002, IL_4CUX_022, IL_4CUX_023, IL_3BNP_001, IL_3D0U_006, IL_3BNP_004, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_3IVK_004, IL_405D_002, IL_4CUV_086, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4CUV_118, IL_1MZP_001, IL_1UN6_005, IL_3U5H_036, IL_4AOB_005, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_4CUV_122, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3SYW_001, IL_1FJG_006, IL_3U5H_022, IL_3U5H_076, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_4CUV_047, IL_4CUV_049, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_1U6B_005, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_4CUV_052, IL_3U5F_063, IL_3U5F_061, IL_3U5H_044, IL_1FJG_044, IL_3U5H_049, IL_2QBG_096, IL_4CUX_040, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_4CUX_044, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_4BPP_088, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_3TD0_006, IL_3TD0_001, IL_1VW3_092, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4CUV_039, IL_4IOA_044, IL_4NVV_016, IL_3U5H_114, IL_4CUV_030, IL_3U5H_116, IL_3U5H_118, IL_4CUX_091, IL_3U5F_074, IL_3U5H_051, IL_2QBG_034, IL_4A1B_028, IL_3U5F_072, IL_2QBG_030, IL_2Q1R_001, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_4CUX_073, IL_1U9S_007, IL_4CUV_120, IL_4IOA_091, IL_4NVV_019, IL_4JK0_001, IL_2AW7_062
IL_32987.1
Compare
IL_4CUV_084, IL_3U5H_085, IL_4A1B_081IL_1S72_046, IL_3LOA_003, IL_4KYY_002, IL_4QCN_030, IL_2QBG_045, IL_4TS2_003, IL_3U5F_093, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_062, IL_1VX6_063, IL_1VW3_035, IL_3U5H_052, IL_1VW3_070, IL_1S72_062, IL_4IOA_043IL_3U5F_012, IL_3U5F_006, IL_4CUX_067, IL_4CUX_036

Children motifs

Child motifCommon motif instancesOnly in IL_53587.1Only in the child motif
IL_53587.2
Compare
IL_1S72_046, IL_3U5H_052, IL_3U5H_062, IL_4TS2_003, IL_4IOA_043, IL_2QBG_045, IL_4CUV_064, IL_4CUV_084, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_4QCN_041, IL_1VW3_035, IL_1VW3_070, IL_4A1B_081IL_3LOA_003, IL_4KYY_002, IL_3U5F_093, IL_1VW3_049, IL_2QBG_065, IL_4QCN_063, IL_1S72_062IL_4BPP_006, IL_3J7A_005, IL_4W21_075
IL_85638.1
Compare
IL_1VW3_049, IL_1S72_062, IL_2QBG_065, IL_4KYY_002, IL_4QCN_063IL_1S72_046, IL_4CUV_084, IL_2QBG_045, IL_3U5H_062, IL_4TS2_003, IL_3U5F_093, IL_4IOA_043, IL_4QCN_041, IL_4CUV_064, IL_1VX6_063, IL_4QCN_030, IL_3U5H_085, IL_1VW3_035, IL_3LOA_003, IL_3U5H_052, IL_1VW3_070, IL_4A1B_081IL_4KQ0_001, IL_4KQ0_002, IL_4KQ0_003, IL_4KQ0_004, IL_4KQ0_005, IL_420D_001, IL_4BPP_020, IL_4KTG_004, IL_4KTG_005, IL_2AW7_011, IL_4KTG_001, IL_4KTG_002, IL_4KTG_003, IL_420D_002, IL_406D_002, IL_3U5F_044, IL_3R1D_002, IL_3W3S_003, IL_3U5F_023, IL_3U5F_022, IL_1VX6_147, IL_1VX6_145, IL_3NJ7_001, IL_4E5C_001, IL_4BPP_012, IL_4IOA_029, IL_3U5H_072, IL_3U5F_070, IL_4CUV_157, IL_3SJ2_002, IL_3SJ2_003, IL_3SJ2_001, IL_3U5H_151, IL_3J7A_019, IL_3CZW_002, IL_3CZW_001, IL_2QEK_002, IL_2R22_001
IL_22529.1
Compare
IL_3U5F_093IL_1S72_046, IL_4CUV_084, IL_4KYY_002, IL_2QBG_045, IL_3U5H_062, IL_4TS2_003, IL_3U5H_052, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_085, IL_1VW3_035, IL_4IOA_043, IL_4QCN_030, IL_3LOA_003, IL_1VX6_063, IL_1VW3_070, IL_1S72_062, IL_4A1B_081IL_3U5F_012, IL_1SI3_001, IL_1VX6_029, IL_4CUX_067, IL_4CUX_036
IL_75508.1
Compare
IL_3LOA_003IL_1S72_046, IL_4CUV_084, IL_4KYY_002, IL_2QBG_045, IL_4QCN_030, IL_3U5H_062, IL_4TS2_003, IL_3U5F_093, IL_1VW3_049, IL_4QCN_041, IL_4CUV_064, IL_2QBG_065, IL_4QCN_063, IL_3U5H_085, IL_1VW3_035, IL_4IOA_043, IL_3U5H_052, IL_1VX6_063, IL_1VW3_070, IL_1S72_062, IL_4A1B_081IL_4CUV_082, IL_4W21_074, IL_2QBG_063, IL_4QCN_061, IL_3Q1Q_006, IL_3U5H_083, IL_1S72_060, IL_4A1B_079, IL_1VW3_047, IL_4W21_107, IL_1VX6_084
Annotations
  • (16)
  • Isolated cWS basepair (H) (2)
  • Intercalated tWH (H) (1)
  • Decoding loop with one bulged A (1)
  • Isolated non-canonical cWW pair (1)
  • Isolated cWS basepair (1)
  • Basepair signature
    cWW-cSW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.65 | Max 1.28
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