Motif IL_53985.1 Version IL_53985.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V88_462 | 4V88 | 0.1184 | 0 | A6 | SSU rRNA | G | 1540 | G | 1541 | G | 1542 | A | 1543 | U | 1544 | A | 1545 | * | U | 1566 | U | 1567 | C | 1568 | A | 1569 | A | 1570 | C | 1571 | cWW | tSH | tSH | cWw | cWW | |
| 2 | IL_8C3A_507 | 8C3A | 0.1133 | 0 | CM | SSU rRNA | G | 1527 | G | 1528 | G | 1529 | A | 1530 | U | 1531 | A | 1532 | * | U | 1553 | U | 1554 | C | 1555 | A | 1556 | A | 1557 | C | 1558 | cWW | tSH | ntSH | cWw | ncWW | |
| 3 | IL_4LFB_055 | 4LFB | 0.0000 | 0 | A | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | ntSH | ntHS | cWw | cWW |
| 4 | IL_5J7L_057 | 5J7L | 0.1455 | 0 | AA | SSU rRNA | C | 1303 | G | 1304 | G | 1305 | A | 1306 | U | 1307 | U | 1308 | * | A | 1329 | U | 1330 | G | 1331 | A | 1332 | A | 1333 | G | 1334 | cWW | tSH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAUA*UUCAAC | 2 |
| CGGAUU*AUGAAG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAU*UCAA | 2 |
| GGAU*UGAA | 2 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (4)
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.12 | Max 0.29
Coloring options: