Motif IL_54650.1 Version IL_54650.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_108 | 5TBW | 0.2352 | 2 | Isolated non-canonical cWW with bulges | 1 | LSU rRNA | C | 2879 | U | 2880 | C | 2881 | * | G | 2943 | U | 2944 | G | 2947 | cWW | cWw | cWW |
| 2 | IL_8C3A_116 | 8C3A | 0.2124 | 2 | 1 | LSU rRNA | C | 2851 | U | 2852 | C | 2853 | * | G | 2915 | U | 2916 | G | 2919 | cWW | cWw | cWW | |
| 3 | IL_4V9F_087 | 4V9F | 0.2102 | 2 | Isolated non-canonical cWW with bulges | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 4 | IL_8VTW_096 | 8VTW | 0.1159 | 2 | 1A | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW | |
| 5 | IL_5J7L_340 | 5J7L | 0.1078 | 2 | Isolated non-canonical cWW with bulges | DA | LSU rRNA | C | 2510 | U | 2511 | C | 2512 | * | G | 2574 | C | 2575 | G | 2578 | cWW | ncWW | cWW |
| 6 | IL_4WF9_095 | 4WF9 | 0.0000 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2537 | U | 2538 | C | 2539 | * | G | 2601 | C | 2602 | G | 2605 | cWW | ncWW | cWW |
| 7 | IL_7A0S_089 | 7A0S | 0.1156 | 2 | Isolated non-canonical cWW with bulges | X | LSU rRNA | C | 2489 | U | 2490 | C | 2491 | * | G | 2553 | C | 2554 | G | 2557 | cWW | cWW | |
| 8 | IL_7ELQ_002 | 7ELQ | 0.4154 | 2 | A | NMT1 RNA | C | 15 | A | 16 | G | 17 | * | C | 32 | C | 33 | G | 36 | cWW | ncWS | cWW | |
| 9 | IL_8C3A_151 | 8C3A | 0.5457 | 1 | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWS | ncWW | |
| 10 | IL_5TBW_145 | 5TBW | 0.5378 | 1 | Isolated non-canonical cWW with bulges | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWW | cWW |
| 11 | IL_8D28_004 | 8D28 | 0.4500 | 3 | B | RNA (33-MER) | C | 9 | A | 10 | G | 11 | * | C | 20 | C | 21 | G | 25 | cWW | cWW | ||
| 12 | IL_6E8U_001 | 6E8U | 0.6721 | 3 | Isolated non-canonical cWW with bulges | B | RNA (37-MER) | U | 30 | G | 31 | U | 32 | * | A | 6 | A | 7 | A | 11 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUC*GCGAG | 4 |
| CUC*GUGAG | 2 |
| UAA*UCGA | 2 |
| UUC*GUGAG | 1 |
| CAG*CCCGG | 1 |
| CAG*CCCUUG | 1 |
| UGU*AAGGAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*CGA | 4 |
| U*UGA | 3 |
| A*CG | 2 |
| A*CCG | 1 |
| A*CCUU | 1 |
| G*AGGA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW with bulges (7)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.38 | Max 0.81
Coloring options: