Motif IL_54702.1 Version IL_54702.1 of this group appears in releases 3.88 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-8 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3IGI_003 | 3IGI | 0.0000 | 3 | A | Group II catalytic intron D1-D4-3 | U | 103 | G | 104 | G | 108 | A | 109 | A | 110 | G | 111 | * | C | 76 | A | 77 | A | 78 | G | 79 | cWW | tSH | cWS | cWW |
| 2 | IL_8C3A_506 | 8C3A | 0.7904 | 1 | CM | SSU rRNA | U | 1354 | A | 1355 | A | 1357 | G | 1358 | U | 1359 | C | 1360 | * | G | 1336 | C | 1337 | U | 1338 | G | 1339 | ncWW | ncWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAGGAAG*CAAG | 1 |
| UAUAGUC*GCUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAGGAA*AA | 1 |
| AUAGU*CU | 1 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Heat map statistics
- Min 0.79 | Avg 0.40 | Max 0.79
Coloring options: