Motif IL_54954.1 Version IL_54954.1 of this group appears in releases 0.6 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | break | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 3-14 | 4-13 | 5-12 | 6-11 | 7-10 | 8-9 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_005 | 3U5H | 0 | 1 | 5 | 25S rRNA | C | 31 | U | 32 | G | 33 | A | 34 | A | 35 | C | 36 | U | 37 | U | 38 | * | A | 45 | U | 46 | C | 47 | A | 48 | U | 50 | A | 51 | A | 52 | G | 53 | cWW | tSH | tHW | tHH | tHS | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAACUU*AUCAAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAACU*UCAAUAA | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, no parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in IL_54954.1 | Only in the child motif |
|---|---|---|---|
| IL_98073.1 Compare | IL_3U5H_005 | IL_4CUV_005 |
- Annotations
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: