Motif IL_55114.1 Version IL_55114.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_3BNQ_005 | 3BNQ | 0.1519 | 1 | B+A | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | ||
2 | IL_3BNP_002 | 3BNP | 0.0000 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW | ||
3 | IL_2QBG_057 | 2QBG | 0.6485 | 1 | B | 23S rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW |
4 | IL_4NVV_045 | 4NVV | 0.7733 | 1 | A | 23S Ribosomal RNA | U | 1286 | A | 1287 | A | 1288 | G | 1289 | * | C | 1247 | G | 1248 | A | 1249 | G | 1251 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CACC*GCAAG | 2 |
UAAG*UGAUG | 1 |
CGAUG*UAAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AC*CAA | 2 |
AA*GAU | 1 |
GAU*AA | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_55114.1 | Only in the parent motif |
---|---|---|---|
IL_05684.1 Compare | IL_2QBG_057, IL_3BNP_002, IL_3BNQ_005 | IL_4NVV_045 | IL_3BNP_003, IL_3V2F_043 |
Children motifs
Child motif | Common motif instances | Only in IL_55114.1 | Only in the child motif |
---|---|---|---|
IL_55114.2 Compare | IL_3BNP_002, IL_2QBG_057, IL_4NVV_045, IL_3BNQ_005 | IL_4CUX_062, IL_3BNP_003 |
- Annotations
-
- (4)
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.44 | Max 0.81
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