Motif IL_05684.1 Version IL_05684.1 of this group appears in releases 1.5 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3BNQ_005 | 3BNQ | 0.3606 | 1 | B+A | A site of human mitochondrial ribosome, A chain | C | 7 | A | 8 | C | 9 | C | 10 | * | G | 15 | C | 16 | A | 17 | G | 19 | cWW | cWW | ||||
| 2 | IL_3BNP_002 | 3BNP | 0.2549 | 1 | A+B | A site of human mitochondrial ribosome, A chain + A site of human mitochondrial ribosome, B chain | C | 6 | A | 7 | C | 8 | C | 9 | * | G | 13 | C | 14 | A | 15 | G | 17 | cWW | cWW | ||||
| 3 | IL_3BNP_003 | 3BNP | 0.0000 | 1 | B+A | A site of human mitochondrial ribosome, B chain | C | 5 | A | 6 | C | 7 | C | 8 | * | G | 14 | C | 15 | A | 16 | G | 18 | cWW | ntHW | ntHH | ntHS | cWW | |
| 4 | IL_2QBG_057 | 2QBG | 0.5159 | 1 | B | 23S rRNA | U | 1468 | A | 1469 | A | 1470 | G | 1471 | * | U | 1520 | G | 1521 | A | 1522 | G | 1524 | cWW | tHH | tHS | cWW | ||
| 5 | IL_3V2F_043 | 3V2F | 0.6584 | 1 | A | 23S Ribosomal RNA | U | 1240 | A | 1241 | A | 1242 | G | 1243 | * | C | 1202 | G | 1203 | A | 1204 | G | 1206 | cWW | ntHW | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACC*GCAAG | 3 |
| UAAG*UGAUG | 1 |
| CGAUG*UAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AC*CAA | 3 |
| AA*GAU | 1 |
| GAU*AA | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_05684.1 | Only in the parent motif |
|---|---|---|---|
| IL_78732.3 Compare | IL_3BNP_003, IL_3BNP_002 | IL_2QBG_057, IL_3V2F_043, IL_3BNQ_005 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003 |
| IL_95774.1 Compare | IL_2QBG_057 | IL_3BNP_003, IL_3BNP_002, IL_3V2F_043, IL_3BNQ_005 | |
| IL_09901.1 Compare | IL_3BNQ_005 | IL_3BNP_003, IL_3BNP_002, IL_3V2F_043, IL_2QBG_057 | IL_2QBG_046 |
| IL_10647.1 Compare | IL_3V2F_043 | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_005, IL_2QBG_057 | IL_4A1B_097, IL_3V2F_026 |
Children motifs
| Child motif | Common motif instances | Only in IL_05684.1 | Only in the child motif |
|---|---|---|---|
| IL_55114.1 Compare | IL_2QBG_057, IL_3BNP_002, IL_3BNQ_005 | IL_3BNP_003, IL_3V2F_043 | IL_4NVV_045 |
| IL_09530.2 Compare | IL_3BNP_003 | IL_2QBG_057, IL_3BNP_002, IL_3V2F_043, IL_3BNQ_005 | IL_2GDI_004, IL_2GDI_008, IL_3D2V_003, IL_4LCK_005 |
- Annotations
- Basepair signature
- cWW-L-R-tHS-cWW
- Heat map statistics
- Min 0.15 | Avg 0.43 | Max 0.83
Coloring options: