Motif IL_55287.1 Version IL_55287.1 of this group appears in releases 0.6 to 1.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 1-10 | 5-10 | 6-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_057 | 4A1B | 0.0000 | 4 | 1 | 26S RRNA | C | 1214 | U | 1215 | C | 1216 | A | 1217 | A | 1220 | G | 1221 | * | C | 1341 | U | 1342 | A | 1344 | G | 1346 | cWW | cWW | ||
| 2 | IL_3Q1Q_008 | 3Q1Q | 0.9603 | 1 | B | RNase P RNA | U | 253 | A | 254 | U | 255 | U | 256 | C | 257 | C | 258 | * | G | 236 | G | 237 | U | 239 | G | 240 | cWW | ntsS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCAUCAG*CUGAAG | 1 |
| UAUUCC*GGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCAUCA*UGAA | 1 |
| AUUC*GUU | 1 |
Release history
| Release | 0.6 | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2012-04-02 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_55287.1 | Only in the parent motif |
|---|---|---|---|
| IL_01251.1 Compare | IL_3Q1Q_008 | IL_4A1B_057 |
Children motifs
| Child motif | Common motif instances | Only in IL_55287.1 | Only in the child motif |
|---|---|---|---|
| IL_25314.1 Compare | IL_3Q1Q_008 | IL_4A1B_057 | |
| IL_80433.1 Compare | IL_4A1B_057 | IL_3Q1Q_008 | IL_3U5H_056 |
- Annotations
- Basepair signature
- cWW-L-R-R-L-L-L-cWW
- Heat map statistics
- Min 0.96 | Avg 0.48 | Max 0.96
Coloring options: