Motif IL_55351.1 Version IL_55351.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7A0S_052 | 7A0S | 0.3676 | 1 | X | LSU rRNA | U | 1447 | A | 1448 | C | 1449 | * | G | 1573 | A | 1574 | G | 1576 | cWW | ncwW | cWW |
| 2 | IL_8F4O_005 | 8F4O | 0.0000 | 1 | B | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 3 | IL_7TZS_001 | 7TZS | 0.2503 | 1 | X | TPP riboswitch (THI element) | G | 18 | G | 19 | U | 20 | * | A | 45 | A | 47 | C | 48 | cWW | cWW | cWW |
| 4 | IL_4V88_448 | 4V88 | 0.6175 | 0 | A6 | SSU rRNA | A | 1234 | C | 1235 | A | 1236 | * | U | 1249 | U | 1250 | U | 1251 | cWW | cWW | |
| 5 | IL_3MOJ_002 | 3MOJ | 0.5781 | 0 | A | LSU rRNA | G | 2569 | G | 2570 | U | 2571 | * | A | 2513 | U | 2514 | C | 2515 | cWW | ncWWa | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGU*AUAC | 2 |
| UAC*GACG | 1 |
| ACA*UUU | 1 |
| GGU*AUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*UA | 2 |
| A*AC | 1 |
| C*U | 1 |
| G*U | 1 |
- Annotations
-
- (5)
- Basepair signature
- cWW-L-R-cWW
- Heat map statistics
- Min 0.25 | Avg 0.40 | Max 0.65
Coloring options: