Motif IL_55456.1 Version IL_55456.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4V9F_087 | 4V9F | 0.8264 | 2 | Isolated non-canonical cWW pair | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
| 2 | IL_5TBW_132 | 5TBW | 0.5609 | 3 | Isolated non-canonical cWW pair | 1 | LSU rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW |
| 3 | IL_5TBW_145 | 5TBW | 0.4222 | 1 | Isolated non-canonical cWW pair | 4 | 5.8S rRNA | U | 64 | A | 65 | A | 66 | * | U | 93 | C | 94 | A | 96 | cWW | ncWW | cWW |
| 4 | IL_7RQB_041 | 7RQB | 0.0000 | 1 | Isolated non-canonical cWW pair | 1A | LSU rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW |
| 5 | IL_5J7L_282 | 5J7L | 0.0663 | 1 | Isolated non-canonical cWW pair | DA | LSU rRNA | C | 1121 | G | 1122 | C | 1123 | * | G | 1031 | A | 1032 | G | 1034 | cWW | cWW | cWW |
| 6 | IL_5J7L_009 | 5J7L | 0.3693 | 1 | Isolated non-canonical cWW pair | AA | SSU rRNA | U | 231 | G | 232 | C | 233 | * | G | 128 | A | 129 | A | 131 | cWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGC*GAUG | 2 |
| UUC*GUGAG | 1 |
| GUA*UUAAGC | 1 |
| UAA*UCGA | 1 |
| UGC*GAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G*AU | 2 |
| U*UGA | 1 |
| U*UAAG | 1 |
| A*CG | 1 |
| G*AA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Isolated non-canonical cWW pair (6)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.07 | Avg 0.46 | Max 0.85
Coloring options: