#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-63-64-5
1 IL_3U5H_0613U5H0.22871525S rRNAG1262G1264U1265G1266*C1275U1276C1277cWWcSHcWwcWW
2 IL_1S72_0291S720.14220Major groove platform with extra cWW (H)0 LSU rRNAG830U831U832G833*C849U850C851cWWcSHcWwcWW
3 IL_4IOA_0184IOA0.09230X LSU rRNAG751G752U753G754*C769U770C771cWWcSHntSHcWwcWW
4 IL_4NVV_0244NVV0.00000A23S Ribosomal RNAG785G786U787G788*C803U804C805cWWcSHcWwcWW
5 IL_4A1B_0384A1B0.15590126S RRNAG894A895U896A897*U913U914C915cWWcSHcWwcWW
6 IL_1VW3_0201VW30.17140A21S ribosomal RNAG629G630U631U632*A647U648C649cWWcSHcWwcWW
7 IL_3U5H_0333U5H0.16600525S rRNAG869G870U871U872*A888U889C890cWWcSHcWwcWW
8 IL_4BPP_0144BPP0.21651A18S RRNAU256G257U259C260*G199U200A201cWWncSHcWwcWW
9 IL_3U5F_0143U5F0.21881618S rRNAU259U261U262C263*G204U205A206cWWcSHcWwcWW
10 IL_1S72_0821S720.244410 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
11 IL_4A1B_1094A1B0.39491126S RRNAU2846U2847U2849U2850*G2816U2817G2818cWWcWwcWW
12 IL_3U5H_1113U5H0.41011525S rRNAU2858U2859U2861U2862*G2828U2829G2830cWWcWwcWW
13 IL_1S72_0031S720.44500Major groove platform with extra cWW (H)0 LSU rRNAC440A441A442C443*G39C40G41cWWcSHcWWancWWcWW
14 IL_2QBZ_0042QBZ0.49370XM-Box RNA, ykoK riboswitch aptamerC33U34C35C36*G149U150G151cWWcSHcwWcWW
15 IL_3P49_0063P490.71511AGlycine riboswitchC34G35A37G38*C51A52G53ncWWntHSncWW
16 IL_3P49_0093P490.73671AGlycine riboswitchC109G110A112G113*C142A143G144ncWWntHScWW
17 IL_1XJR_0011XJR0.73481Isolated basepair with bulged basesAs2m RNAC9C10A12G13*C39A40G41cWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUG*CUC2
GGUU*AUC2
UUUUU*GUG2
CGAAG*CAG2
GAGUG*CUC1
GUUG*CUC1
GAUA*UUC1
UGAUC*GUA1
UUUUC*GUA1
GGCUU*GUC1
CAAC*GCG1
CUCC*GUG1
CCGAG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
GU*U4
UUU*U3
GAA*A2
AGU*U1
UU*U1
AU*U1
GAU*U1
GCU*U1
AA*C1
UC*U1
CGA*A1
Annotations
  • (14)
  • Major groove platform with extra cWW (H) (2)
  • Isolated basepair with bulged bases (1)
  • Basepair signature
    cWW-cSH-cWW-cWW
    Heat map statistics
    Min 0.09 | Avg 0.42 | Max 0.84
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