#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 71-72-32-63-64-5
1 IL_3U5H_0613U5H0.31101525S rRNAG1262G1264U1265G1266*C1275U1276C1277cWWcSHcWwcWW
2 IL_1S72_0291S720.17440Major groove platform with extra cWW (H)0 LSU rRNAG830U831U832G833*C849U850C851cWWcSHcWwcWW
3 IL_3V2F_0223V2F0.15340A23S Ribosomal RNAG738G739U740G741*C756U757C758cWWcSHcWwcWW
4 IL_4IOA_0184IOA0.15420X LSU rRNAG751G752U753G754*C769U770C771cWWcSHntSHcWwcWW
5 IL_4A1B_0384A1B0.00000126S RRNAG894A895U896A897*U913U914C915cWWcSHcWwcWW
6 IL_3U5F_0143U5F0.19191618S rRNAU259U261U262C263*G204U205A206cWWcSHcWwcWW
7 IL_3U5H_0333U5H0.17620525S rRNAG869G870U871U872*A888U889C890cWWcSHcWwcWW
8 IL_4BPP_0144BPP0.26231A18S RRNAU256G257U259C260*G199U200A201cWWncSHcWwcWW
9 IL_3V2F_0913V2F0.25471A23S Ribosomal RNAG2489G2490U2492U2493*A2459U2460C2461cWWcSHcWwcWW
10 IL_1S72_0821S720.238210 LSU rRNAG2524G2525U2527U2528*G2494U2495C2496cWWcSHcWwcWW
11 IL_4A1B_1094A1B0.36061126S RRNAU2846U2847U2849U2850*G2816U2817G2818cWWcWwcWW
12 IL_3U5H_1113U5H0.38401525S rRNAU2858U2859U2861U2862*G2828U2829G2830cWWcWwcWW
13 IL_1S72_0031S720.42850Major groove platform with extra cWW (H)0 LSU rRNAC440A441A442C443*G39C40G41cWWcSHcWWancWWcWW
14 IL_2QBZ_0042QBZ0.43740XM-Box RNA, ykoK riboswitch aptamerC33U34C35C36*G149U150G151cWWcSHcwWcWW
15 IL_3V2F_0033V2F0.53970A23S Ribosomal RNAC433U434C435C436*G42A43G44cWWcSHcWWcWW
16 IL_1XJR_0011XJR0.70981Isolated basepair with bulged basesAs2m RNAC9C10A12G13*C39A40G41cWWcWW
17 IL_3P49_0093P490.68831AGlycine riboswitchC109G110A112G113*C142A143G144ncWWntHScWW
18 IL_3P49_0063P490.66911AGlycine riboswitchC34G35A37G38*C51A52G53ncWWntHSncWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUG*CUC2
UUUUU*GUG2
CGAAG*CAG2
GAGUG*CUC1
GUUG*CUC1
GAUA*UUC1
UUUUC*GUA1
GGUU*AUC1
UGAUC*GUA1
AUC*GGUUU1
GGCUU*GUC1
CAAC*GCG1
CUCC*GUG1
GAG*CUCC1
CCGAG*CAG1
Non-Watson-Crick part of the motif
SequenceCounts
GU*U3
UUU*U3
GAA*A2
AGU*U1
UU*U1
AU*U1
GAU*U1
U*GUU1
GCU*U1
AA*C1
UC*U1
A*UC1
CGA*A1

Release history

Release1.51.61.71.81.91.101.111.121.13
Date2013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_55938.4Only in the child motif
IL_55938.5
Compare
IL_4A1B_038, IL_1XJR_001, IL_1S72_029, IL_3U5F_014, IL_2QBZ_004, IL_1S72_003, IL_4BPP_014, IL_3U5H_061, IL_3U5H_111, IL_1S72_082, IL_4A1B_109, IL_3U5H_033, IL_3P49_006, IL_3P49_009, IL_4IOA_018IL_3V2F_003, IL_3V2F_091, IL_3V2F_022IL_1VW3_020, IL_4NVV_024
Annotations
  • (15)
  • Major groove platform with extra cWW (H) (2)
  • Isolated basepair with bulged bases (1)
  • Basepair signature
    cWW-cSH-cWW-cWW
    Heat map statistics
    Min 0.08 | Avg 0.44 | Max 0.84
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