Motif IL_87064.1 Version IL_87064.1 of this group appears in releases 1.14 to 1.14
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 4-7 | 5-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_4A1B_029 | 4A1B | 0.0000 | 1 | 1 | 26S RRNA | G | 704 | A | 705 | U | 706 | A | 707 | G | 708 | * | C | 721 | G | 722 | C | 724 | C | 725 | cWW | tHW | tHS | cWW |
2 | IL_4NVV_028 | 4NVV | 0.9235 | 0 | A | 23S Ribosomal RNA | C | 893 | U | 894 | G | 895 | A | 896 | C | 897 | * | G | 973 | G | 974 | U | 975 | G | 976 | cWW | tHS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUAG*CGUCC | 1 |
CUGAC*GGUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
AUA*GUC | 1 |
UGA*GU | 1 |
Release history
Release | 1.14 |
---|---|
Date | 2014-04-27 |
Status | New id, 1 parent |
Parent motifs
Parent motif | Common motif instances | Only in IL_87064.1 | Only in the parent motif |
---|---|---|---|
IL_87507.1 Compare | IL_4A1B_029 | IL_4NVV_028 | IL_3V2F_026 |
Children motifs
Child motif | Common motif instances | Only in IL_87064.1 | Only in the child motif |
---|---|---|---|
IL_14901.1 Compare | IL_4A1B_029 | IL_4NVV_028 | IL_1J2B_001 |
IL_56250.1 Compare | IL_4NVV_028 | IL_4A1B_029 | IL_4A1B_097 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-L-tHS-cWW
- Heat map statistics
- Min 0.92 | Avg 0.46 | Max 0.92
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