Motif IL_56594.1 Version IL_56594.1 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 1-6 | 2-5 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2Y9B_001 | 2Y9B | 0.4580 | 0 | V | HOMO SAPIENS U4A SNRNA | U | 825 | U | 826 | G | 827 | * | C | 802 | C | 803 | G | 804 | cWW | cWW | cWW | |
| 2 | IL_3U5H_138 | 3U5H | 0.0000 | 3 | 5 | 25S rRNA | G | 3328 | U | 3329 | A | 3330 | * | U | 3373 | U | 3374 | C | 3378 | cWW | cWw | cWW | |
| 3 | IL_4A1B_129 | 4A1B | 0.1300 | 3 | 1 | 26S RRNA | G | 3286 | U | 3287 | A | 3288 | * | U | 3329 | U | 3330 | C | 3334 | cWW | cWw | cWW | |
| 4 | IL_1S72_085 | 1S72 | 0.4924 | 2 | Isolated non-canonical cWW (H) | 0 | LSU rRNA | U | 2545 | U | 2546 | C | 2547 | * | G | 2609 | U | 2610 | G | 2613 | cWW | cWw | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUG*CCG | 1 |
| GUA*UUAAGC | 1 |
| GUA*UUCAGC | 1 |
| UUC*GUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| U*C | 1 |
| U*UAAG | 1 |
| U*UCAG | 1 |
| U*UGA | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_56594.1 | Only in the parent motif |
|---|---|---|---|
| IL_90459.3 Compare | IL_4A1B_129, IL_3U5H_138, IL_1S72_085, IL_2Y9B_001 | IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_3V2F_041, IL_4IOA_037 |
Children motifs
| Child motif | Common motif instances | Only in IL_56594.1 | Only in the child motif |
|---|---|---|---|
| IL_25549.1 Compare | IL_4A1B_129, IL_3U5H_138, IL_1S72_085, IL_2Y9B_001 | IL_2QBG_040, IL_4IOA_037, IL_4A1C_001, IL_4CUX_009, IL_4CUV_144 |
- Annotations
-
- (3)
- Isolated non-canonical cWW (H) (1)
- Basepair signature
- cWW-cWW-cWW
- Heat map statistics
- Min 0.13 | Avg 0.33 | Max 0.61
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