#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3break 4 5 61-62-53-4
1 IL_3V2F_0413V2F0.11621A23S Ribosomal RNAC1121G1122C1123*G1031A1032G1034cWWcWWcWW
2 IL_2QBG_0402QBG0.11191B23S rRNAC1121G1122C1123*G1031A1032G1034cWWcWWcWW
3 IL_4IOA_0374IOA0.00001Isolated non-canonical cWW (H)X LSU rRNAC1132G1133C1134*G1042A1043G1045cWWcWWcWW
4 IL_4A1C_0014A1C0.4309125.8S RRNAC67A68A69*U94C95G97cWWncWScWW
5 IL_1S72_0851S720.80252Isolated non-canonical cWW (H)0 LSU rRNAU2545U2546C2547*G2609U2610G2613cWWcWwcWW
6 IL_4A1B_1294A1B0.62833126S RRNAG3286U3287A3288*U3329U3330C3334cWWcWwcWW
7 IL_3U5H_1383U5H0.56713525S rRNAG3328U3329A3330*U3373U3374C3378cWWcWwcWW
8 IL_2Y9B_0012Y9B0.67260VHOMO SAPIENS U4A SNRNAU825U826G827*C802C803G804cWWcWWcWW
9 IL_3U5F_0743U5F0.81522618S rRNAG1352U1353G1354*U1369U1372C1373cWWcwWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGC*GAUG2
GAUG*CGC1
CAA*UCAG1
UUC*GUGAG1
GUA*UUCAGC1
GUA*UUAAGC1
UUG*CCG1
GUG*UUAUC1
Non-Watson-Crick part of the motif
SequenceCounts
G*AU2
AU*G1
A*CA1
U*UGA1
U*UCAG1
U*UAAG1
U*C1
U*UAU1

Release history

Release1.11.21.31.41.51.61.71.81.91.101.111.121.13
Date2013-04-082013-05-042013-06-012013-07-012013-08-032013-08-312013-09-282013-11-052013-12-072014-01-042014-02-012014-03-012014-03-29
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Parent motifCommon motif instancesOnly in IL_90459.3Only in the parent motif
IL_90459.2
Compare
IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_1S72_085, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138IL_4IOA_037

Children motifs

Child motifCommon motif instancesOnly in IL_90459.3Only in the child motif
IL_56594.1
Compare
IL_4A1B_129, IL_3U5H_138, IL_1S72_085, IL_2Y9B_001IL_3U5F_074, IL_2QBG_040, IL_4A1C_001, IL_3V2F_041, IL_4IOA_037
IL_71837.1
Compare
IL_2QBG_040, IL_4A1C_001, IL_4IOA_037IL_3U5F_074, IL_1S72_085, IL_2Y9B_001, IL_4A1B_129, IL_3V2F_041, IL_3U5H_138IL_3U5H_085, IL_3U5F_006, IL_4BPP_006, IL_1S72_062, IL_4A1B_081
IL_78141.1
Compare
IL_3U5F_074IL_2QBG_040, IL_4A1C_001, IL_1S72_085, IL_3U5H_138, IL_4A1B_129, IL_3V2F_041, IL_2Y9B_001, IL_4IOA_037IL_3TD0_002, IL_3KTW_002, IL_1FJG_010, IL_2AW7_052, IL_1NLC_002, IL_1T0E_002, IL_1NLC_001, IL_4FNJ_001, IL_4A1B_115, IL_3U5F_041, IL_4A1B_052, IL_1O9M_004, IL_4JK0_004, IL_4IOA_078, IL_1O9M_003, IL_4J5V_003, IL_4J5V_002, IL_4J5V_001, IL_2QBG_020, IL_4J5V_006, IL_4J5V_005, IL_3SZX_001, IL_3U5H_076, IL_1VW3_068, IL_157D_002, IL_157D_001, IL_1ZH5_001, IL_2FQN_001, IL_1YZ9_002, IL_2FQN_004, IL_2QBG_096, IL_4BPP_015, IL_4BPP_068, IL_4E59_001, IL_4IOA_044, IL_4A1B_048, IL_2QBG_018, IL_1VW3_079, IL_2O3X_004, IL_4A1B_041, IL_1Z7F_002, IL_1FJG_056, IL_3U5F_050, IL_1Z7F_001, IL_4A1B_112, IL_3BNL_004, IL_3SYW_001, IL_3BNL_001, IL_3TD1_006, IL_4E48_005, IL_4E48_004, IL_4E48_006, IL_4E48_001, IL_4E48_003, IL_4E48_002, IL_3CUN_002, IL_3FO4_001, IL_4BPP_002, IL_1XJR_003, IL_4BPP_001, IL_2QBG_083, IL_4IOA_054, IL_3U5F_082, IL_3TD0_006, IL_1VW3_009, IL_3U5H_028, IL_2QEK_002, IL_2QEK_001, IL_4A1B_071, IL_3U5F_043, IL_1VW3_001, IL_1ZEV_004, IL_1ZEV_005, IL_1ZEV_006, IL_1ZEV_001, IL_1ZEV_002, IL_1ZEV_003, IL_4JK0_002, IL_4JK0_001, IL_4NVV_067, IL_4JK0_005, IL_2O3V_001, IL_3U5H_087, IL_4K31_003, IL_1S72_047, IL_4BPP_073, IL_4BPP_070, IL_3NJ7_002, IL_4K31_002, IL_4K31_001, IL_2Q1R_002, IL_4BPP_079, IL_4K31_004, IL_4IOA_104, IL_4A1B_061, IL_4J5V_007, IL_1VW3_016, IL_1MFQ_002, IL_4IOA_109, IL_4IOA_025, IL_4KYY_001, IL_4BPP_088, IL_4NGF_002, IL_4NVV_055, IL_4BPP_082, IL_4BPP_083, IL_1KFO_003, IL_1KFO_002, IL_3U5F_034, IL_3U5F_036, IL_1VW3_092, IL_3UMY_001, IL_5MSF_001, IL_1ZX7_002, IL_4A1C_009, IL_3BNP_004, IL_1FJG_062, IL_3U5F_084, IL_3U5F_087, IL_3U5H_149, IL_4A1B_013, IL_3TD1_001, IL_1VW3_015, IL_4IOA_030, IL_3BNQ_001, IL_3U5F_089, IL_1MFQ_003, IL_3BNQ_006, IL_3U5H_017, IL_4NVV_043, IL_3BNP_001, IL_3D0U_006, IL_2QBG_065, IL_3U5F_002, IL_3BNT_006, IL_3BNT_001, IL_4BPP_034, IL_2O3V_004, IL_3IVK_004, IL_405D_002, IL_2QBG_034, IL_1MWL_004, IL_405D_001, IL_1MWL_001, IL_1T0D_002, IL_4KYY_003, IL_1UN6_005, IL_3U5H_036, IL_2AW7_064, IL_2AW7_063, IL_1S72_095, IL_1VW3_031, IL_3RW6_004, IL_3U5H_133, IL_3DIR_006, IL_3LOA_003, IL_2ZKO_001, IL_3SYW_002, IL_3SYW_003, IL_3U5F_015, IL_2QBG_030, IL_4IOA_010, IL_3U5H_022, IL_3MEI_002, IL_4NVV_036, IL_1RPU_001, IL_4A1B_015, IL_1YZ9_001, IL_1FJG_006, IL_3U5H_008, IL_4A1B_034, IL_4NVV_093, IL_4IOA_013, IL_3RG5_001, IL_3U5H_128, IL_2OE5_001, IL_4IOA_019, IL_3U5H_121, IL_4M6D_011, IL_1VW3_043, IL_1S72_024, IL_3U5F_063, IL_3U5F_061, IL_2Q1R_001, IL_1FJG_044, IL_1VW3_049, IL_4BPP_058, IL_3SZX_002, IL_3SZX_003, IL_3GLP_002, IL_3NJ6_002, IL_3NJ6_001, IL_3GLP_001, IL_4FNJ_002, IL_4A1B_083, IL_3TD0_005, IL_4NVV_083, IL_1U6B_005, IL_3TD0_001, IL_4BPP_056, IL_1ZX7_008, IL_1U6B_001, IL_4A1B_027, IL_4A1B_024, IL_4M4O_001, IL_4BPP_037, IL_4BPP_038, IL_1MZP_001, IL_4NVV_016, IL_3U5H_114, IL_4AOB_005, IL_3U5H_116, IL_3U5H_118, IL_3U5H_051, IL_2QBG_085, IL_4A1B_028, IL_3U5F_072, IL_4KYY_002, IL_3U5H_044, IL_4A1B_104, IL_1FJG_058, IL_4M4O_002, IL_1U9S_007, IL_4IOA_091, IL_4NVV_019, IL_3U5H_049, IL_2AW7_062
Annotations
  • (7)
  • Isolated non-canonical cWW (H) (2)
  • Basepair signature
    cWW-cWW-cWW
    Heat map statistics
    Min 0.06 | Avg 0.55 | Max 1.05
    Help

    Coloring options:

    Copyright 2025 BGSU RNA group. Page generated in 0.4201 s