Motif IL_57517.1 Version IL_57517.1 of this group appears in releases 0.5 to 0.5
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1SA9_002 | 1SA9 | 0 | 0 | Double sheared | C+D | RNA (8-mer) | C | 203 | G | 204 | A | 205 | G | 206 | * | C | 211 | G | 212 | A | 213 | G | 214 | cWW | tSH | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GA | 1 |
Release history
| Release | 0.5 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_57517.1 | Only in the parent motif |
|---|---|---|---|
| IL_05994.1 Compare | IL_1SA9_002 | IL_2QBZ_003, IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_001, IL_1S72_098, IL_3DIR_002 |
Children motifs
| Child motif | Common motif instances | Only in IL_57517.1 | Only in the child motif |
|---|---|---|---|
| IL_13959.1 Compare | IL_1SA9_002 | IL_2ZJR_057, IL_1SAQ_002, IL_2QBG_088, IL_3U5F_085, IL_4A1B_117, IL_3UXR_087, IL_4A1B_132, IL_3U5H_141, IL_3U5H_120, IL_3U5F_088, IL_2O3V_002, IL_3D0U_002, IL_2ZJR_082, IL_2XZM_004, IL_4A1B_005, IL_1FJG_059, IL_4A1B_007, IL_1S72_098, IL_3DIR_002, IL_2QBG_017, IL_3U5F_013, IL_2IL9_002, IL_2AW7_065, IL_2XZM_089, IL_1SA9_001 |
- Annotations
-
- Double sheared (1)
- Basepair signature
- Heat map statistics
- Min 0.00 | Avg 0.00 | Max 0.00
Coloring options: