Motif IL_05994.1 Version IL_05994.1 of this group appears in releases 0.4 to 0.4
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3F1H_086 | 3F1H | 0.4650 | 0 | A | 23S RRNA | C | 2364 | G | 2365 | A | 2366 | G | 2367 | * | C | 2350 | G | 2351 | A | 2352 | G | 2353 | cWW | ntSH | ntHS | cWW | |
| 2 | IL_1SAQ_002 | 1SAQ | 0.2770 | 0 | Double sheared | A+B | RNA (8-mer) | C | 103 | G | 104 | A | 105 | G | 106 | * | C | 111 | G | 112 | A | 113 | G | 114 | cWW | tSH | tHS | cWW |
| 3 | IL_3D0U_002 | 3D0U | 0.3155 | 0 | Double sheared | A | Lysine Riboswitch RNA | C | 16 | G | 17 | A | 18 | G | 19 | * | C | 67 | G | 68 | A | 69 | G | 70 | cWW | tSH | tHS | cWW |
| 4 | IL_2ZJR_057 | 2ZJR | 0.3078 | 0 | X | LSU rRNA | C | 1491 | A | 1492 | A | 1493 | G | 1494 | * | U | 1530 | C | 1531 | A | 1532 | G | 1533 | cWW | ntSH | tHS | cWW | |
| 5 | IL_1SA9_002 | 1SA9 | 0.2572 | 0 | Double sheared | C+D | RNA (8-mer) | C | 203 | G | 204 | A | 205 | G | 206 | * | C | 211 | G | 212 | A | 213 | G | 214 | cWW | tSH | ntHS | cWW |
| 6 | IL_2QBZ_003 | 2QBZ | 0.2804 | 1 | X | M-Box RNA, ykoK riboswitch aptamer | U | 28 | G | 29 | A | 30 | G | 31 | * | U | 153 | A | 154 | A | 156 | G | 157 | cWW | tSH | tHS | cWW | |
| 7 | IL_1SA9_001 | 1SA9 | 0.2430 | 0 | B+A | RNA (8-mer) | C | 111 | G | 112 | A | 113 | G | 114 | * | C | 103 | G | 104 | A | 105 | G | 106 | cWW | tSH | tHS | cWW | |
| 8 | IL_1S72_098 | 1S72 | 0.2327 | 0 | 0 | LSU rRNA | C | 2881 | G | 2882 | A | 2883 | G | 2884 | * | C | 2873 | G | 2874 | A | 2875 | G | 2876 | cWW | tSH | tHS | cWW | |
| 9 | IL_1FJG_059 | 1FJG | 0.0000 | 0 | Double sheared (H) | A | SSU rRNA | G | 1416 | G | 1417 | A | 1418 | G | 1419 | * | U | 1481 | G | 1482 | A | 1483 | C | 1484 | cWW | tSH | tHS | cWW |
| 10 | IL_2ZJR_082 | 2ZJR | 0.3125 | 0 | Double sheared (H) | X | LSU rRNA | C | 2343 | G | 2344 | A | 2345 | G | 2346 | * | C | 2329 | G | 2330 | A | 2331 | G | 2332 | cWW | ntSH | ntHS | cWW |
| 11 | IL_3DIR_002 | 3DIR | 0.3169 | 0 | A | RNA (174-MER) | C | 19 | G | 20 | A | 21 | G | 22 | * | C | 70 | G | 71 | A | 72 | G | 73 | cWW | tSH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAG*CGAG | 8 |
| CAAG*UCAG | 1 |
| UGAG*UAAAG | 1 |
| GGAG*UGAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GA*GA | 9 |
| AA*CA | 1 |
| GA*AAA | 1 |
Release history
| Release | 0.4 |
|---|---|
| Date | 2011-12-08 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_05994.1 | Only in the parent motif |
|---|---|---|---|
| IL_63091.1 Compare | IL_2QBZ_003, IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1S72_098, IL_3DIR_002 | IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001 | |
| IL_01643.2 Compare | IL_2ZJR_082, IL_1SA9_002, IL_1FJG_059, IL_3D0U_002, IL_1SA9_001 | IL_2ZJR_057, IL_2QBZ_003, IL_3F1H_086, IL_1SAQ_002, IL_1S72_098, IL_3DIR_002 | IL_3BNP_003, IL_3BNP_002, IL_3BNQ_011, IL_3BNQ_005 |
Children motifs
| Child motif | Common motif instances | Only in IL_05994.1 | Only in the child motif |
|---|---|---|---|
| IL_03728.1 Compare | IL_2QBZ_003, IL_2ZJR_057, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_001, IL_1S72_098, IL_3DIR_002 | IL_3F1H_086, IL_1SA9_002 | IL_3O30_087, IL_2XZM_004, IL_3O30_090, IL_3PYO_077, IL_2QBG_088, IL_2AW7_065, IL_2XZM_089, IL_2QBG_017 |
| IL_57517.1 Compare | IL_1SA9_002 | IL_2QBZ_003, IL_2ZJR_057, IL_3F1H_086, IL_1SAQ_002, IL_1FJG_059, IL_3D0U_002, IL_2ZJR_082, IL_1SA9_001, IL_1S72_098, IL_3DIR_002 |
- Annotations
-
- (6)
- Double sheared (3)
- Double sheared (H) (2)
- Basepair signature
- Heat map statistics
- Min 0.11 | Avg 0.31 | Max 0.66
Coloring options: