Motif IL_58103.4 Version IL_58103.4 of this group appears in releases 3.18 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 1-3 | 1-8 | 4-8 | 5-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_6CZR_158 | 6CZR | 0.3810 | 1 | Minor groove platform | 1a | SSU rRNA | C | 1128 | A | 1129 | C | 1130 | U | 1131 | C | 1132 | * | G | 1107 | U | 1108 | G | 1110 | ncSH | cWW | ntHS | cWW | ncSH |
| 2 | IL_4WF9_115 | 4WF9 | 0.2262 | 2 | Symmetric double minor groove platform | Y | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 42 | C | 45 | A | 46 | cWW | ncWS | cWW | ntSW | |
| 3 | IL_5TBW_376 | 5TBW | 0.1586 | 2 | Symmetric double minor groove platform | AS | 5S rRNA | U | 32 | U | 33 | C | 34 | C | 35 | C | 36 | * | G | 41 | C | 44 | A | 45 | ncSH | cWW | cWS | cWW | tSW |
| 4 | IL_5FDV_114 | 5FDV | 0.0000 | 2 | Symmetric double minor groove platform (H) | 1B | 5S rRNA | U | 34 | U | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | A | 48 | cSH | cWW | cWS | cWW | tSW |
| 5 | IL_4V9F_104 | 4V9F | 0.0889 | 2 | Symmetric double minor groove platform | 9 | 5S rRNA | U | 33 | A | 34 | C | 35 | C | 36 | C | 37 | * | G | 43 | C | 46 | A | 47 | cSH | cWW | cWS | cWW | tSW |
| 6 | IL_5NS3_002 | 5NS3 | 0.2266 | 2 | Symmetric double minor groove platform | C | double-stranded RNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
| 7 | IL_5J7L_358 | 5J7L | 0.3053 | 2 | Symmetric double minor groove platform | DB | 5S rRNA | A | 34 | C | 35 | C | 36 | C | 37 | C | 38 | * | G | 44 | C | 47 | U | 48 | ncSH | cWW | cWS | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCCC*GAACA | 2 |
| ACCCC*GAACU | 2 |
| CACUC*GUUG | 1 |
| UUCCC*GAUCA | 1 |
| UACCC*GAACA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCC*AAC | 2 |
| CCC*AAC | 2 |
| ACU*UU | 1 |
| UCC*AUC | 1 |
| ACC*AAC | 1 |
Release history
| Release | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Symmetric double minor groove platform (5)
- Symmetric double minor groove platform (H) (1)
- Minor groove platform (1)
- Basepair signature
- cWW-L-L-cWS-tSW-cWW
- Heat map statistics
- Min 0.09 | Avg 0.26 | Max 0.50
Coloring options: