Motif IL_58291.1 Version IL_58291.1 of this group appears in releases 0.6 to 0.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 1-6 | 2-3 | 2-5 | 4-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_065 | 4A1B | 0.6768 | 0 | 1 | 26S RRNA | G | 1518 | G | 1519 | U | 1520 | U | 1521 | * | A | 1859 | C | 1860 | cWW | cWW | |||
| 2 | IL_3U5H_067 | 3U5H | 0.6785 | 0 | 5 | 25S rRNA | G | 1492 | G | 1493 | U | 1494 | U | 1495 | * | A | 1835 | C | 1836 | cWW | cWW | |||
| 3 | IL_3UXR_063 | 3UXR | 0.6566 | 0 | A | 23S ribosomal RNA | G | 1666 | G | 1667 | A | 1668 | A | 1669 | * | U | 1993 | C | 1994 | cWW | tSH | cWW | ||
| 4 | IL_3UXR_047 | 3UXR | 0.6346 | 0 | A | 23S ribosomal RNA | G | 1310 | G | 1311 | U | 1312 | U | 1313 | * | A | 1603 | C | 1604 | cWW | ncSH | cWW | ||
| 5 | IL_1NTB_003 | 1NTB | 0.0000 | 0 | A+B | RNA (22-mer) + RNA (18-mer) | C | 15 | U | 16 | U | 17 | C | 18 | * | G | 110 | G | 111 | cWW | cWW | |||
| 6 | IL_2ZJR_022 | 2ZJR | 0.5405 | 0 | X | LSU rRNA | U | 857 | G | 858 | U | 859 | U | 860 | * | A | 944 | G | 945 | cWW | cWW | |||
| 7 | IL_3U5F_045 | 3U5F | 0.3746 | 0 | 6 | 18S rRNA | C | 962 | A | 963 | U | 964 | U | 965 | * | A | 865 | G | 866 | cWW | cWW | |||
| 8 | IL_1S72_050 | 1S72 | 0.5105 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | G | 1416 | G | 1417 | U | 1418 | U | 1419 | * | A | 1678 | C | 1679 | cWW | cWW | ||
| 9 | IL_2ZJR_046 | 2ZJR | 0.5407 | 0 | Major groove platform; stack outside cWW (H) | X | LSU rRNA | G | 1323 | G | 1324 | U | 1325 | U | 1326 | * | A | 1619 | C | 1620 | cWW | cWW | ||
| 10 | IL_1S72_008 | 1S72 | 0.5058 | 0 | Major groove platform; stack outside cWW (H) | 0 | LSU rRNA | C | 245 | G | 246 | A | 247 | A | 248 | * | U | 265 | G | 266 | cWW | tSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUU*AC | 5 |
| GGAA*UC | 1 |
| CUUC*GG | 1 |
| UGUU*AG | 1 |
| CAUU*AG | 1 |
| CGAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GU* | 6 |
| GA* | 2 |
| UU* | 1 |
| AU* | 1 |
Release history
| Release | 0.6 |
|---|---|
| Date | 2012-04-02 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_58291.1 | Only in the parent motif |
|---|---|---|---|
| IL_38336.1 Compare | IL_2ZJR_022, IL_1NTB_003, IL_2ZJR_046, IL_1S72_050 | IL_3U5H_067, IL_1S72_008, IL_3UXR_047, IL_3UXR_063, IL_4A1B_065, IL_3U5F_045 | IL_3DIR_004, IL_3O58_078, IL_3O58_094, IL_3O30_044 |
| IL_13468.1 Compare | IL_1S72_008 | IL_2ZJR_022, IL_2ZJR_046, IL_1S72_050, IL_1NTB_003, IL_3UXR_047, IL_3UXR_063, IL_3U5H_067, IL_4A1B_065, IL_3U5F_045 | IL_1S72_061, IL_2ZJR_062 |
Children motifs
| Child motif | Common motif instances | Only in IL_58291.1 | Only in the child motif |
|---|---|---|---|
| IL_58291.2 Compare | IL_2ZJR_022, IL_3U5H_067, IL_1S72_008, IL_1S72_050, IL_1NTB_003, IL_2ZJR_046, IL_4A1B_065, IL_3U5F_045 | IL_3UXR_063, IL_3UXR_047 | IL_3V2F_047 |
- Annotations
-
- (7)
- Major groove platform; stack outside cWW (H) (3)
- Basepair signature
- 06_cWW---cWW
- Heat map statistics
- Min 0.07 | Avg 0.45 | Max 0.68
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