Motif IL_58686.1 Version IL_58686.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | 5-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_065 | 5TBW | 0.5804 | 1 | Multiple bulged bases with near cWW | 1 | LSU rRNA | G | 1817 | U | 1818 | U | 1819 | U | 1820 | C | 1822 | * | G | 1623 | G | 1624 | A | 1625 | U | 1626 | cWW | ncWW | ncWW | cWW | |
| 2 | IL_1J2B_001 | 1J2B | 0.5621 | 0 | C | tRNA(Val) | G | 943 | G | 944 | A | 945 | G | 946 | G | 947 | * | C | 926 | G | 927 | C | 928 | C | 929 | cWW | cWW | ||||
| 3 | IL_8DK7_001 | 8DK7 | 0.0000 | 1 | C | RNA (34-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 27 | A | 29 | G | 30 | C | 31 | ncWW | cWW | ntSH | cSH | cWW | |
| 4 | IL_8D28_003 | 8D28 | 0.2408 | 1 | B | RNA (33-MER) | G | 4 | A | 5 | U | 6 | A | 7 | C | 8 | * | G | 26 | A | 28 | G | 29 | C | 30 | cWW | cWW | ntSH | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAC*GCAGC | 2 |
| GUUUUC*GGAU | 1 |
| GGAGG*CGCC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUA*CAG | 2 |
| UUUU*GA | 1 |
| GAG*GC | 1 |
- Annotations
-
- (3)
- Multiple bulged bases with near cWW (1)
- Basepair signature
- cWW-cWW-tSH-cSH-cWW
- Heat map statistics
- Min 0.24 | Avg 0.39 | Max 0.59
Coloring options: