Motif IL_59137.10 Version IL_59137.10 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_037 | 5TBW | 0.4272 | 1 | Single bulged G | 1 | LSU rRNA | A | 983 | U | 985 | * | A | 1099 | U | 1100 | cWW | cWW |
| 2 | IL_3IGI_004 | 3IGI | 0.3988 | 1 | Single bulged G | A | Group IIC intron | U | 82 | U | 84 | * | A | 99 | A | 100 | cWW | cWW |
| 3 | IL_5J7L_271 | 5J7L | 0.3360 | 1 | Single bulged G | DA | LSU rRNA | U | 913 | C | 915 | * | G | 862 | A | 863 | cWW | cWW |
| 4 | IL_1U9S_006 | 1U9S | 0.5343 | 1 | Major groove intercalation | A | RIBONUCLEASE P | U | 158 | C | 160 | * | G | 140 | G | 141 | ncWW | cWW |
| 5 | IL_7A0S_099 | 7A0S | 0.5000 | 1 | Major groove intercalation | X | LSU rRNA | U | 2853 | C | 2855 | * | G | 2813 | G | 2814 | cWW | cWW |
| 6 | IL_3D0U_005 | 3D0U | 0.4607 | 1 | Single bulged G | A | Lysine Riboswitch RNA | U | 106 | G | 108 | * | C | 81 | G | 82 | cWW | ncWW |
| 7 | IL_3DIL_005 | 3DIL | 0.3946 | 1 | Single bulged G | A | RNA (174-MER) | U | 109 | C | 111 | * | G | 84 | G | 85 | cWW | cWW |
| 8 | IL_4V9F_010 | 4V9F | 0.3695 | 1 | Single bulged G | 0 | LSU rRNA | U | 374 | C | 376 | * | G | 274 | G | 275 | cWW | cWW |
| 9 | IL_4LFB_016 | 4LFB | 0.3371 | 1 | Single bulged G | A | SSU rRNA | U | 387 | A | 389 | * | U | 375 | G | 376 | cWW | cWW |
| 10 | IL_5J7L_019 | 5J7L | 0.2753 | 1 | Single bulged G | AA | SSU rRNA | U | 387 | A | 389 | * | U | 375 | G | 376 | cWW | cWW |
| 11 | IL_4C7O_004 | 4C7O | 0.2512 | 1 | Single bulged G | E | SRP RNA | U | 27 | U | 29 | * | A | 15 | A | 16 | cWW | cWW |
| 12 | IL_5DEA_002 | 5DEA | 0.2739 | 1 | Single bulged G | C | sc1 | C | 5 | G | 7 | * | C | 30 | G | 31 | cWW | cWW |
| 13 | IL_5DE8_001 | 5DE8 | 0.2886 | 1 | Single bulged G | A | sc1 | C | 5 | G | 7 | * | C | 30 | G | 31 | cWW | cWW |
| 14 | IL_5J7L_001 | 5J7L | 0.1115 | 1 | Single bulged G | AA | SSU rRNA | U | 30 | A | 32 | * | U | 552 | A | 553 | cWW | cWW |
| 15 | IL_4LFB_001 | 4LFB | 0.0000 | 1 | Single bulged G | A | SSU rRNA | U | 30 | A | 32 | * | U | 552 | A | 553 | cWW | cWW |
| 16 | IL_6CZR_113 | 6CZR | 0.1596 | 1 | Single bulged G | 1a | SSU rRNA | U | 31 | A | 33 | * | U | 536 | A | 537 | cWW | cWW |
| 17 | IL_2IZN_001 | 2IZN | 0.2294 | 1 | Single bulged G | R | RNA (19-mer) | C | 5||||P_1 | C | 7||||P_1 | * | G | 14||||P_1 | G | 15||||P_1 | cWW | cWW |
| 18 | IL_3NDB_004 | 3NDB | 0.2817 | 1 | Single bulged G | M | SRP RNA | G | 137 | G | 138 | * | C | 239 | C | 241 | cWW | ncWW |
| 19 | IL_4LFB_036 | 4LFB | 0.3364 | 1 | Single bulged G | A | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 20 | IL_5J7L_040 | 5J7L | 0.3751 | 1 | Single bulged G | AA | SSU rRNA | U | 1390 | U | 1391 | * | G | 925 | G | 927 | cWW | cWW |
| 21 | IL_6CZR_148 | 6CZR | 0.3577 | 1 | Single bulged G | 1a | SSU rRNA | U | 1373 | U | 1374 | * | G | 903 | G | 905 | ncWW | cWW |
| 22 | IL_5U30_002 | 5U30 | 0.4512 | 1 | Single bulged G | B | sgRNA | C | 3 | U | 4 | * | A | 7 | G | 9 | cWW | cWW |
| 23 | IL_7A0S_017 | 7A0S | 0.4898 | 1 | Single bulged G | X | LSU rRNA | U | 715 | U | 716 | * | G | 741 | A | 743 | cWW | cWW |
| 24 | IL_5J7L_262 | 5J7L | 0.4324 | 1 | Single bulged G | DA | LSU rRNA | U | 702 | U | 703 | * | G | 728 | A | 730 | cWW | cWW |
| 25 | IL_4WF9_023 | 4WF9 | 0.3879 | 1 | Single bulged G | X | LSU rRNA | U | 747 | U | 748 | * | G | 773 | A | 775 | cWW | cWW |
| 26 | IL_4V9F_026 | 4V9F | 0.4696 | 1 | Single bulged G | 0 | LSU rRNA | A | 793 | U | 794 | * | A | 819 | U | 821 | cWW | cWW |
| 27 | IL_7RQB_020 | 7RQB | 0.5571 | 1 | Single bulged G | 1A | LSU rRNA | G | 702 | U | 703 | * | G | 728 | C | 730 | cWW | cWW |
| 28 | IL_4LVW_002 | 4LVW | 0.5052 | 1 | Single bulged G | A | THF riboswitch | G | 67 | U | 69 | * | G | 17 | C | 18 | cWW | cWW |
| 29 | IL_3SUX_001 | 3SUX | 0.5072 | 1 | Single bulged G | X | THF riboswitch | G | 76 | U | 78 | * | G | 20 | C | 21 | cWW | cWW |
| 30 | IL_4V88_442 | 4V88 | 0.4410 | 1 | Single bulged G | A6 | SSU rRNA | U | 1627 | U | 1628 | * | G | 1149 | A | 1151 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGC*GG | 4 |
| UU*GGA | 4 |
| UGA*UA | 3 |
| UU*GGG | 3 |
| UGU*AA | 2 |
| UGA*UG | 2 |
| CGG*CG | 2 |
| GGU*GC | 2 |
| AGU*AU | 1 |
| UGC*GA | 1 |
| UGG*CG | 1 |
| CGC*GG | 1 |
| GG*CGC | 1 |
| CU*AGG | 1 |
| AU*AGU | 1 |
| GU*GGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| G* | 19 |
| *G | 11 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Single bulged G (28)
- Major groove intercalation (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.47 | Max 0.93
Coloring options: