Motif IL_59137.9 Version IL_59137.9 of this group appears in releases 3.54 to 3.61

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2	break		3		4	1-4	2-3
1	IL_5TBW_037	5TBW	0.4426	1	Single bulged G	1	LSU rRNA	A	983	U	985	*	A	1099	U	1100	cWW	cWW
2	IL_3IGI_004	3IGI	0.4497	1	Single bulged G	A	Group IIC intron	U	82	U	84	*	A	99	A	100	cWW	cWW
3	IL_5J7L_271	5J7L	0.3924	1	Single bulged G	DA	LSU rRNA	U	913	C	915	*	G	862	A	863	cWW	cWW
4	IL_1U9S_006	1U9S	0.6122	1	Major groove intercalation	A	RIBONUCLEASE P	U	158	C	160	*	G	140	G	141	ncWW	cWW
5	IL_7A0S_099	7A0S	0.5828	1	Major groove intercalation	X	LSU rRNA	U	2853	C	2855	*	G	2813	G	2814	cWW	cWW
6	IL_3D0U_005	3D0U	0.5359	1	Single bulged G	A	Lysine Riboswitch RNA	U	106	G	108	*	C	81	G	82	cWW	ncWW
7	IL_3DIL_005	3DIL	0.4723	1	Single bulged G	A	RNA (174-MER)	U	109	C	111	*	G	84	G	85	cWW	cWW
8	IL_4V9F_010	4V9F	0.4542	1	Single bulged G	0	LSU rRNA	U	374	C	376	*	G	274	G	275	cWW	cWW
9	IL_4LFB_016	4LFB	0.4174	1	Single bulged G	A	SSU rRNA	U	387	A	389	*	U	375	G	376	cWW	cWW
10	IL_5J7L_019	5J7L	0.3629	1	Single bulged G	AA	SSU rRNA	U	387	A	389	*	U	375	G	376	cWW	cWW
11	IL_4C7O_004	4C7O	0.3134	1	Single bulged G	E	SRP RNA	U	27	U	29	*	A	15	A	16	cWW	cWW
12	IL_5DEA_002	5DEA	0.3414	1	Single bulged G	C	sc1	C	5	G	7	*	C	30	G	31	cWW	cWW
13	IL_5DE8_001	5DE8	0.3535	1	Single bulged G	A	sc1	C	5	G	7	*	C	30	G	31	cWW	cWW
14	IL_5J7L_001	5J7L	0.1872	1	Single bulged G	AA	SSU rRNA	U	30	A	32	*	U	552	A	553	cWW	cWW
15	IL_4LFB_001	4LFB	0.1596	1	Single bulged G	A	SSU rRNA	U	30	A	32	*	U	552	A	553	cWW	cWW
16	IL_6CZR_113	6CZR	0.0000	1	Single bulged G	1a	SSU rRNA	U	31	A	33	*	U	536	A	537	cWW	cWW
17	IL_2IZN_001	2IZN	0.1760	1	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_1	C	7\|\|\|\|P_1	*	G	14\|\|\|\|P_1	G	15\|\|\|\|P_1	cWW	cWW
18	IL_2IZN_005	2IZN	0.1760	1	Single bulged G	R	RNA (19-mer)	C	5\|\|\|\|P_P	C	7\|\|\|\|P_P	*	G	14\|\|\|\|P_P	G	15\|\|\|\|P_P
19	IL_3NDB_004	3NDB	0.2596	1	Single bulged G	M	SRP RNA	G	137	G	138	*	C	239	C	241	cWW	ncWW
20	IL_4LFB_036	4LFB	0.3054	1	Single bulged G	A	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
21	IL_5J7L_040	5J7L	0.3321	1	Single bulged G	AA	SSU rRNA	U	1390	U	1391	*	G	925	G	927	cWW	cWW
22	IL_6CZR_148	6CZR	0.2905	1	Single bulged G	1a	SSU rRNA	U	1373	U	1374	*	G	903	G	905	ncWW	cWW
23	IL_5U30_002	5U30	0.4268	1	Single bulged G	B	sgRNA	C	3	U	4	*	A	7	G	9	cWW	cWW
24	IL_7A0S_017	7A0S	0.4114	1	Single bulged G	X	LSU rRNA	U	715	U	716	*	G	741	A	743	cWW	cWW
25	IL_5J7L_262	5J7L	0.3611	1	Single bulged G	DA	LSU rRNA	U	702	U	703	*	G	728	A	730	cWW	cWW
26	IL_4WF9_023	4WF9	0.3300	1	Single bulged G	X	LSU rRNA	U	747	U	748	*	G	773	A	775	cWW	cWW
27	IL_4V9F_026	4V9F	0.4007	1	Single bulged G	0	LSU rRNA	A	793	U	794	*	A	819	U	821	cWW	cWW
28	IL_7RQB_020	7RQB	0.4792	1	Single bulged G	1A	LSU rRNA	G	702	U	703	*	G	728	C	730	cWW	cWW
29	IL_4LVW_002	4LVW	0.4222	1	Single bulged G	A	THF riboswitch	G	67	U	69	*	G	17	C	18	cWW	cWW
30	IL_3SUX_001	3SUX	0.4209	1	Single bulged G	X	THF riboswitch	G	76	U	78	*	G	20	C	21	cWW	cWW
31	IL_3SUX_004	3SUX	0.4209	1	Single bulged G	X	THF riboswitch	G	76\|\|\|\|17_555	U	78\|\|\|\|17_555	*	G	20\|\|\|\|17_555	C	21\|\|\|\|17_555	cWW	cWW
32	IL_4V88_442	4V88	0.3700	1	Single bulged G	A6	SSU rRNA	U	1627	U	1628	*	G	1149	A	1151	cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
UGC*GG	4
UU*GGA	4
UGA*UA	3
UU*GGG	3
GGU*GC	3
UGU*AA	2
UGA*UG	2
CGG*CG	2
CGC*GG	2
AGU*AU	1
UGC*GA	1
UGG*CG	1
GG*CGC	1
CU*AGG	1
AU*AGU	1
GU*GGC	1

Non-Watson-Crick part of the motif

Sequence	Counts
G*	21
*G	11

Release history

Release	3.54	3.55	3.56	3.57	3.58	3.59	3.60	3.61
Date	2022-02-02	2022-03-02	2022-03-30	2022-04-27	2022-05-25	2022-06-22	2022-07-20	2022-08-17
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Single bulged G (30)
Major groove intercalation (2)
Basepair signature: cWW-cWW
Heat map statistics: Min 0.06 | Avg 0.46 | Max 0.93

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