Motif IL_59276.1 Version IL_59276.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 1-3 | 1-9 | 2-3 | 2-8 | 3-7 | 4-9 | 5-8 | 6-7 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5F_025 | 3U5F | 0.9563 | 1 | 6 | C | 443 | C | 444 | A | 445 | A | 446 | U | 447 | C | 448 | * | G | 458 | A | 460 | G | 461 | cSH | cWW | tWH | cWS | cWW | cWW | |||
| 2 | IL_3J7A_022 | 3J7A | 0.9525 | 1 | C-loop with extra cWW pair (H) | A | C | 449 | C | 450 | A | 451 | A | 452 | U | 453 | U | 454 | * | A | 464 | A | 466 | G | 467 | ncSH | cWW | tWH | cWS | cWW | cWW | ||
| 3 | IL_1VX6_068 | 1VX6 | 0.0000 | 1 | A | G | 1649 | U | 1650 | C | 1651 | A | 1652 | A | 1653 | C | 1654 | * | G | 1662 | A | 1664 | C | 1665 | cWW | ncWW | tWH | cWS | cWW | ||||
| 4 | IL_4CUV_069 | 4CUV | 0.1304 | 1 | 1 | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | tWH | cWS | cWW | |||||
| 5 | IL_3U5H_068 | 3U5H | 0.1480 | 1 | 5 | G | 1500 | U | 1501 | C | 1502 | A | 1503 | A | 1504 | C | 1505 | * | G | 1513 | A | 1515 | C | 1516 | cWW | ncSH | tWH | cWS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCAAC*GGAC | 2 |
| CCAAUC*GGAG | 1 |
| CCAAUU*AGAG | 1 |
| GUCAAC*GAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CAAU*GA | 2 |
| UCAA*GA | 2 |
| UCAA*AA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_59276.1 | Only in the parent motif |
|---|---|---|---|
| IL_19451.1 Compare | IL_4CUV_069, IL_3U5H_068 | IL_1VX6_068, IL_3J7A_022, IL_3U5F_025 | |
| IL_07300.2 Compare | IL_3U5F_025 | IL_1VX6_068, IL_3J7A_022, IL_3U5H_068, IL_4CUV_069 | IL_3U5F_052, IL_4BPP_048 |
Children motifs
| Child motif | Common motif instances | Only in IL_59276.1 | Only in the child motif |
|---|---|---|---|
| IL_96898.1 Compare | IL_4CUV_069, IL_3U5H_068, IL_1VX6_068 | IL_3J7A_022, IL_3U5F_025 | |
| IL_84284.1 Compare | IL_3J7A_022, IL_3U5F_025 | IL_4CUV_069, IL_3U5H_068, IL_1VX6_068 | IL_4W23_049, IL_3U5F_052, IL_4BPP_048 |
- Annotations
-
- (4)
- C-loop with extra cWW pair (H) (1)
- Basepair signature
- cWW-cSH-tWH-cSH-tWH-cSH-cWS-cWW
- Heat map statistics
- Min 0.09 | Avg 0.50 | Max 0.98
Coloring options: