Motif IL_60613.1 Version IL_60613.1 of this group appears in releases 1.14 to 1.15
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | 6-7 | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_2QBG_015 | 2QBG | 0.0000 | 0 | B | 23S rRNA | U | 293 | A | 294 | G | 295 | * | C | 343 | A | 344 | A | 345 | A | 346 | A | 347 | cWW | ntHS | cWW | |
2 | IL_4NVV_013 | 4NVV | 0.4214 | 0 | A | 23S Ribosomal RNA | U | 317 | A | 318 | G | 319 | * | C | 367 | G | 368 | A | 369 | A | 370 | A | 371 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UAG*CAAAA | 1 |
UAG*CGAAA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
A*AAA | 1 |
A*GAA | 1 |
Release history
Parent motifs
Parent motif | Common motif instances | Only in IL_60613.1 | Only in the parent motif |
---|---|---|---|
IL_00998.1 Compare | IL_2QBG_015 | IL_4NVV_013 | IL_3V2F_013 |
Children motifs
Child motif | Common motif instances | Only in IL_60613.1 | Only in the child motif |
---|---|---|---|
IL_63917.1 Compare | IL_2QBG_015 | IL_4NVV_013 | IL_1VWW_041, IL_4QCN_012 |
- Annotations
-
- (2)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.42 | Avg 0.21 | Max 0.42
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