Motif IL_00998.1 Version IL_00998.1 of this group appears in releases 0.7 to 1.13
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2QBG_015 | 2QBG | 0.0000 | 0 | B | 23S rRNA | U | 293 | A | 294 | G | 295 | * | C | 343 | A | 344 | A | 345 | A | 346 | A | 347 | cWW | ntHS | cWW | |
| 2 | IL_3V2F_013 | 3V2F | 0.4028 | 0 | A | 23S Ribosomal RNA | U | 293 | A | 294 | G | 295 | * | C | 343 | G | 344 | A | 345 | A | 346 | A | 347 | cWW | cWW | cSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAG*CAAAA | 1 |
| UAG*CGAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*AAA | 1 |
| A*GAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-08 | 2013-05-04 | 2013-06-01 | 2013-07-01 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-05 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_00998.1 | Only in the parent motif |
|---|---|---|---|
| IL_69009.1 Compare | IL_2QBG_015 | IL_3V2F_013 | IL_3UXR_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_00998.1 | Only in the child motif |
|---|---|---|---|
| IL_60613.1 Compare | IL_2QBG_015 | IL_3V2F_013 | IL_4NVV_013 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.40 | Avg 0.20 | Max 0.40
Coloring options: