Motif IL_00998.1 Version IL_00998.1 of this group appears in releases 0.7 to 1.13

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3	break		4		5		6		7		8	1-8	2-5	3-4	6-7
1	IL_2QBG_015	2QBG	0.0000	0	B	23S rRNA	U	293	A	294	G	295	*	C	343	A	344	A	345	A	346	A	347	cWW	ntHS	cWW
2	IL_3V2F_013	3V2F	0.4028	0	A	23S Ribosomal RNA	U	293	A	294	G	295	*	C	343	G	344	A	345	A	346	A	347	cWW		cWW	cSH

3D structures

Complete motif including flanking bases

Sequence	Counts
UAG*CAAAA	1
UAG*CGAAA	1

Non-Watson-Crick part of the motif

Sequence	Counts
A*AAA	1
A*GAA	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-08	2013-05-04	2013-06-01	2013-07-01	2013-08-03	2013-08-31	2013-09-28	2013-11-05	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29
Status	New id, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_00998.1	Only in the parent motif
IL_69009.1 Compare	IL_2QBG_015	IL_3V2F_013	IL_3UXR_013

Children motifs

Child motif	Common motif instances	Only in IL_00998.1	Only in the child motif
IL_60613.1 Compare	IL_2QBG_015	IL_3V2F_013	IL_4NVV_013

Annotations: (2)
Basepair signature: cWW-R-R-tHS-cWW
Heat map statistics: Min 0.40 | Avg 0.20 | Max 0.40

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Coloring options: Nucleotide numbers

Motif IL_00998.1 Version IL_00998.1 of this group appears in releases 0.7 to 1.13 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_00998.1 Version IL_00998.1 of this group appears in releases 0.7 to 1.13

Download

Csv

Json