Motif IL_63917.1 Version IL_63917.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | 5-6 | 6-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1VWW_041 | 1VWW | 0.9160 | -1 | 5 | 28S ribosomal RNA | G | 1051 | G | 1064 | G | 1065 | * | C | 988 | U | 989 | C | 990 | C | 991 | C | 992 | cWW | ncWW | cWW | ncSH | |
| 2 | IL_4QCN_012 | 4QCN | 0.0000 | 0 | A | 23S Ribosomal RNA | U | 317 | A | 318 | G | 319 | * | C | 367 | G | 368 | A | 369 | A | 370 | A | 371 | cWW | cWW | cSH | ||
| 3 | IL_2QBG_015 | 2QBG | 0.4208 | 0 | B | 23S rRNA | U | 293 | A | 294 | G | 295 | * | C | 343 | A | 344 | A | 345 | A | 346 | A | 347 | cWW | ntHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUG*CGG | 1 |
| UAG*CGAAA | 1 |
| UAG*CAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CU*G | 1 |
| A*GAA | 1 |
| A*AAA | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_63917.1 | Only in the parent motif |
|---|---|---|---|
| IL_60613.1 Compare | IL_2QBG_015 | IL_1VWW_041, IL_4QCN_012 | IL_4NVV_013 |
Children motifs
| Child motif | Common motif instances | Only in IL_63917.1 | Only in the child motif |
|---|---|---|---|
| IL_63917.2 Compare | IL_2QBG_015, IL_4QCN_012 | IL_1VWW_041 |
- Annotations
-
- (3)
- Basepair signature
- cWW-L-R-R-R-cWW
- Heat map statistics
- Min 0.42 | Avg 0.51 | Max 0.94
Coloring options: