Motif IL_62499.8 Version IL_62499.8 of this group appears in releases 1.14 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 5 | 1-2 | 1-5 | 2-3 | 3-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1XJR_004 | 1XJR | 0.4312 | 1 | 180 degree turn | A | s2m RNA | G | 19 | C | 20 | * | G | 28 | A | 29 | C | 31 | ncsS | cWW | cWW | ncsS |
| 2 | IL_1FJG_050 | 1FJG | 0.0000 | 5 | 180 degree turn (H) | A | SSU rRNA | G | 1255 | G | 1258 | * | C | 1277 | A | 1279 | C | 1282 | cSs | cWW | cWW | |
| 3 | IL_2AW7_057 | 2AW7 | 0.3167 | 5 | A | 16S ribosomal RNA | G | 1255 | G | 1258 | * | C | 1277 | G | 1279 | C | 1282 | cSs | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GC*GAUC | 1 |
| GAUG*CUAAUC | 1 |
| GAAG*CGGACC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AU | 1 |
| AU*UAAU | 1 |
| AA*GGAC | 1 |
Release history
| Release | 1.14 |
|---|---|
| Date | 2014-04-27 |
| Status | Updated, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_62499.8 | Only in the parent motif |
|---|---|---|---|
| IL_62499.7 Compare | IL_2AW7_057, IL_1FJG_050 | IL_1XJR_004 | IL_3U5F_077 |
| IL_96206.3 Compare | IL_1XJR_004 | IL_2AW7_057, IL_1FJG_050 | IL_1S72_017 |
Children motifs
| Child motif | Common motif instances | Only in IL_62499.8 | Only in the child motif |
|---|---|---|---|
| IL_62499.9 Compare | IL_2AW7_057, IL_1FJG_050 | IL_1XJR_004 | IL_3U5F_077 |
| IL_26910.1 Compare | IL_1XJR_004 | IL_2AW7_057, IL_1FJG_050 | IL_1FJG_012, IL_1S72_017 |
- Annotations
-
- 180 degree turn (H) (1)
- 180 degree turn (1)
- (1)
- Basepair signature
- cWW-R-cWW
- Heat map statistics
- Min 0.32 | Avg 0.28 | Max 0.50
Coloring options: