Motif IL_63450.1 Version IL_63450.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 1-7 | 2-6 | 3-4 | 3-5 | 4-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_5TBW_087 | 5TBW | 0.2774 | 1 | Major groove platform with extra pair | 1 | LSU rRNA | G | 2206 | A | 2207 | A | 2208 | G | 2210 | * | C | 2235 | G | 2236 | C | 2237 | cWW | cWW | |||
| 2 | IL_5TBW_011 | 5TBW | 0.0000 | 1 | Major groove platform with extra pair | 1 | LSU rRNA | G | 237 | A | 238 | G | 239 | G | 241 | * | U | 177 | U | 178 | C | 179 | cWW | cWW | cSH | cWW | |
| 3 | IL_5TBW_091 | 5TBW | 0.3477 | 0 | Major groove platform with extra pair | 1 | LSU rRNA | G | 2391 | C | 2392 | G | 2393 | G | 2394 | * | U | 2986 | A | 2987 | C | 2988 | cWW | cWW | cSH | cWW | |
| 4 | IL_7SZU_003 | 7SZU | 0.4856 | 0 | R | RNA aptamer | G | 49 | C | 50 | A | 51 | C | 52 | * | G | 25 | A | 26 | C | 27 | cWW | cWW | cSH | cWW | ||
| 5 | IL_7RQB_093 | 7RQB | 0.5220 | 0 | Major groove platform with extra pair | 1A | LSU rRNA | C | 2456 | U | 2457 | G | 2458 | A | 2459 | * | U | 2493 | G | 2494 | G | 2495 | cWW | ncWW | ntSH | cWW | |
| 6 | IL_6DME_003 | 6DME | 0.4893 | 0 | A | ppGpp Riboswitch | G | 33 | A | 34 | A | 35 | G | 36 | * | C | 20 | A | 21 | C | 22 | cWW | cwW | cSH | cWW | ||
| 7 | IL_4V9F_072 | 4V9F | 0.4661 | 0 | 0 | LSU rRNA | G | 2090 | G | 2091 | G | 2092 | G | 2093 | * | U | 2652 | A | 2653 | C | 2654 | cWW | cWW | cSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAUG*CGC | 1 |
| GAGUG*UUC | 1 |
| GCGG*UAC | 1 |
| GCAC*GAC | 1 |
| CUGA*UGG | 1 |
| GAAG*CAC | 1 |
| GGGG*UAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAU*G | 1 |
| AGU*U | 1 |
| CG*A | 1 |
| CA*A | 1 |
| UG*G | 1 |
| AA*A | 1 |
| GG*A | 1 |
- Annotations
-
- Major groove platform with extra pair (4)
- (3)
- Basepair signature
- cWW-cWW-cSH-cWW
- Heat map statistics
- Min 0.24 | Avg 0.35 | Max 0.57
Coloring options: