Motif IL_63566.1 Version IL_63566.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | break | 3 | 4 | 1-4 | 2-3 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_7JJU_003 | 7JJU | 0.5744 | 3 | B | PLRV_xrRNA | U | 6 | C | 9 | * | G | 36 | A | 38 | cWW | cWW | |
| 2 | IL_7JJU_001 | 7JJU | 0.5815 | 3 | A | PLRV_xrRNA | U | 6 | C | 9 | * | G | 36 | A | 38 | cWW | cWW | |
| 3 | IL_7VTI_003 | 7VTI | 0.3292 | 2 | Major groove intercalation | B | crRNA | U | 27 | U | 30 | * | A | 9 | G | 10 | cWW | cWW |
| 4 | IL_5VCI_004 | 5VCI | 0.1917 | 1 | Major groove intercalation | B+A | RNA (12-mer) | U | 2 | U | 4 | * | A | 11 | G | 12 | cWW | cWW |
| 5 | IL_4PCJ_004 | 4PCJ | 0.2123 | 1 | Major groove intercalation | A | trCUG-3('5) | U | 25 | U | 27 | * | A | 11 | G | 12 | cWW | cWW |
| 6 | IL_1U6B_010 | 1U6B | 0.1299 | 1 | Major groove intercalation | B | 197-MER | U | 160 | U | 162 | * | A | 150 | G | 151 | cWW | cWW |
| 7 | IL_5DCV_005 | 5DCV | 0.0000 | 1 | Major groove intercalation | D | RNA (47-MER) | U | 3 | U | 5 | * | A | 48 | G | 49 | cWW | cWW |
| 8 | IL_5XTM_004 | 5XTM | 0.1758 | 1 | Major groove intercalation | D | RNA (47-MER) | U | 3 | U | 5 | * | A | 44 | G | 45 | cWW | cWW |
| 9 | IL_4YAZ_008 | 4YAZ | 0.3668 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | C | 64 | C | 67 | * | G | 51 | G | 52 | cWW | cWW |
| 10 | IL_1NTA_002 | 1NTA | 0.8912 | 5 | Major groove intercalation | A+B | RNA (22-mer) + RNA (18-mer) | C | 7 | G | 13 | * | C | 113 | G | 114 | cWW | cWW |
| 11 | IL_4V9F_021 | 4V9F | 0.3897 | 2 | Multiple bulged bases | 0 | LSU rRNA | C | 699 | G | 702 | * | C | 726 | G | 727 | cWW | cWW |
| 12 | IL_4YAZ_007 | 4YAZ | 0.3482 | 2 | Multiple bulged bases | R | Cyclic di-GMP-I riboswitch | U | 47 | G | 50 | * | C | 68 | G | 69 | cWW | cWW |
| 13 | IL_4LFB_005 | 4LFB | 0.4355 | 2 | Multiple bulged bases | A | SSU rRNA | C | 63 | G | 66 | * | C | 103 | G | 104 | cWW | cWW |
| 14 | IL_5J7L_005 | 5J7L | 0.4489 | 2 | Multiple bulged bases | AA | SSU rRNA | C | 63 | A | 66 | * | U | 103 | G | 104 | cWW | cWW |
| 15 | IL_6CZR_117 | 6CZR | 0.5545 | 2 | Multiple bulged bases | 1a | SSU rRNA | C | 64 | G | 67 | * | C | 97 | G | 98 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAU*AG | 5 |
| UAGC*GAA | 2 |
| CGUG*CG | 2 |
| UGAU*AG | 1 |
| CAGC*GG | 1 |
| CAUUUGG*CG | 1 |
| CAUG*CG | 1 |
| UAAG*CG | 1 |
| CGAA*UG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A* | 5 |
| AG*A | 2 |
| GA* | 2 |
| GU* | 2 |
| AG* | 1 |
| AUUUG* | 1 |
| AU* | 1 |
| AA* | 1 |
- Annotations
-
- Major groove intercalation (7)
- Multiple bulged bases (6)
- (2)
- Basepair signature
- cWW-cWW
- Heat map statistics
- Min 0.06 | Avg 0.40 | Max 0.94
Coloring options: