Motif IL_64894.1 Version IL_64894.1 of this group appears in releases 1.17 to 1.17
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | break | 3 | 4 | 5 | 6 | 1-6 | 2-3 | 4-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4KQY_004 | 4KQY | 0.0000 | 0 | Minor groove platform | A | SAM-I riboswitch | C | 49 | G | 50 | * | C | 73 | A | 74 | A | 75 | G | 76 | cWW | cWW | ncSH |
| 2 | IL_1VWW_112 | 1VWW | 0.7205 | 3 | 5 | LSU rRNA | A | 2850 | G | 2855 | * | C | 3837 | U | 3838 | G | 3839 | U | 3840 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CG*CAAG | 1 |
| GAUGG*CCGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| *AA | 1 |
| AUG*CG | 1 |
Release history
| Release | 1.17 |
|---|---|
| Date | 2014-09-04 |
| Status | New id, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in IL_64894.1 | Only in the parent motif |
|---|---|---|---|
| IL_46648.8 Compare | IL_4KQY_004 | IL_1VWW_112 | IL_3U5H_117, IL_4NVV_095, IL_2QBG_098, IL_4A1B_114, IL_4CUV_077, IL_4C7O_002, IL_3U5H_078, IL_1S72_087, IL_3WBM_004, IL_1VW3_081, IL_4IOA_093, IL_4CUV_121, IL_4LCK_003, IL_2QWY_005, IL_4A1B_069 |
Children motifs
| Child motif | Common motif instances | Only in IL_64894.1 | Only in the child motif |
|---|---|---|---|
| IL_55583.1 Compare | IL_4KQY_004 | IL_1VWW_112 | IL_4CUV_111 |
- Annotations
-
- (1)
- Minor groove platform (1)
- Basepair signature
- cWW-R-R-cWW
- Heat map statistics
- Min 0.72 | Avg 0.36 | Max 0.72
Coloring options: