Motif IL_65510.1 Version IL_65510.1 of this group appears in releases 3.77 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 1-9 | 7-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4P97_001 | 4P97 | 0.5786 | 1 | A+B | RNA (16-mer) + RNA (11-mer) | C | 5 | U | 6 | A | 7 | C | 8 | C | 10 | A | 11 | C | 12 | * | G | 40 | G | 41 | cWW | cWW | |
| 2 | IL_2PN3_002 | 2PN3 | 0.1427 | 0 | A+B | RNA (24-mer) + RNA (20-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW | |
| 3 | IL_7JRT_004 | 7JRT | 0.0000 | 0 | A | RNA nano bracelet | G | 91 | A | 92 | A | 93 | C | 94 | U | 95 | A | 96 | C | 97 | * | G | 117 | C | 118 | cWW | cWW | |
| 4 | IL_7JRT_002 | 7JRT | 0.1492 | 0 | A | RNA nano bracelet | G | 24 | A | 25 | A | 26 | C | 27 | U | 28 | A | 29 | C | 30 | * | G | 50 | C | 51 | cWW | cWW | |
| 5 | IL_3P59_001 | 3P59 | 0.1673 | 0 | A+B | RNA (15-mer) + RNA (10-mer) | G | 52 | A | 53 | A | 54 | C | 55 | U | 56 | A | 57 | C | 58 | * | G | 110 | C | 111 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAACUAC*GC | 4 |
| CUACCCAC*GG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AACUA* | 4 |
| UACCCA* | 1 |
Release history
| Release | 3.77 | 3.78 | 3.79 | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2023-12-06 | 2024-01-03 | 2024-01-03 | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-L-cWW-L-L-R-L
- Heat map statistics
- Min 0.12 | Avg 0.27 | Max 0.61
Coloring options: