Motif IL_66414.4 Version IL_66414.4 of this group appears in releases 3.48 to 3.53

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	break		8		9		10		11		12		13		14	1-14	2-13	3-12	4-11	5-10	6-9	6-10	7-8
1	IL_4V9F_001	4V9F	0.1349	Triple sheared with non-canonical cWW	0	LSU rRNA	A	516	U	517	G	518	A	519	A	520	A	521	U	522	*	G	21	U	22	G	23	G	24	A	25	U	26	U	27	cWW	cwW	tSH	tHS	tHS			cWW
2	IL_5TBW_015	5TBW	0.1208	Triple sheared with non-canonical cWW	1+4	LSU rRNA + 5.8S rRNA	G	404	U	405	G	406	A	407	A	408	A	409	U	410	*	A	13	C	14	G	15	G	16	A	17	U	18	C	19	cWW	cwW	ntSH	tHS	tHS	ntHS	ncWS	cWW
3	IL_4Y4O_179	4Y4O	0.0604	Triple sheared with non-canonical cWW (H)	2A	LSU rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	ntSH	tHS	tHS	ntHS		cWW
4	IL_5J7L_245	5J7L	0.0000	Triple sheared with non-canonical cWW	DA	LSU rRNA	C	510	U	511	G	512	A	513	A	514	A	515	C	516	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
5	IL_4WF9_001	4WF9	0.0565	Triple sheared with non-canonical cWW	X	LSU rRNA	C	555	U	556	G	557	A	558	A	559	A	560	C	561	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	tSH	tHS	tHS	ntHS		cWW
6	IL_7A0S_001	7A0S	0.0912	Triple sheared with non-canonical cWW	X	LSU rRNA	C	520	U	521	G	522	A	523	A	524	A	525	C	526	*	G	24	U	25	G	26	G	27	A	28	U	29	G	30	cWW	cwW	ntSH	tHS	tHS	ntHS		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUGAAAC*GUGGAUG	4
AUGAAAU*GUGGAUU	1
GUGAAAU*ACGGAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UGAAA*UGGAU	5
UGAAA*CGGAU	1

Release history

Release	3.48	3.49	3.50	3.51	3.52	3.53
Date	2021-08-18	2021-09-15	2021-10-13	2021-11-10	2021-12-08	2022-01-05
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Triple sheared with non-canonical cWW (5)
Triple sheared with non-canonical cWW (H) (1)
Basepair signature: cWW-cWW-tSH-tHS-tHS-L-R-cWW
Heat map statistics: Min 0.06 | Avg 0.10 | Max 0.18

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