Motif IL_66584.3 Version IL_66584.3 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3R9W_001 | 3R9W | 0.6482 | 0 | Quadruple sheared | B | RNA301 | G | 1515||||2_455 | G | 1516||||2_455 | G | 1517||||2_455 | A | 1518||||2_455 | A | 1519||||2_455 | C | 1520||||2_455 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | ntHS | tHS | cWW |
| 2 | IL_3FTE_001 | 3FTE | 0.5705 | 0 | Quadruple sheared | D+C | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | cWW | |
| 3 | IL_4V9F_063 | 4V9F | 0.1260 | 1 | tSH-tSH-tHH-tHS | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW | |
| 4 | IL_4Y4O_241 | 4Y4O | 0.0942 | 1 | tSH-tSH-tHH-tHS (H) | 2A | LSU rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_5J7L_308 | 5J7L | 0.0952 | 1 | tSH-tSH-tHH-tHS | DA | LSU rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 6 | IL_4IOA_063 | 4IOA | 0.0653 | 1 | tSH-tSH-tHH-tHS (H) | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | tHS | cWW | |
| 7 | IL_5TBW_078 | 5TBW | 0.0000 | 1 | tSH-tSH-tHH-tHS | 1 | LSU rRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAAC*GGGAAC | 2 |
| CGUAAC*GGAGAAG | 2 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GAAGAAG | 1 |
| CGUAAC*GGAUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GGAA | 2 |
| GUAA*GAGAA | 2 |
| GUAC*AAGAA | 1 |
| GUAA*AAGAA | 1 |
| GUAA*GAUAA | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tSH-tSH-tHH-tHS (3)
- Quadruple sheared (2)
- tSH-tSH-tHH-tHS (H) (2)
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.30 | Max 0.67
Coloring options: