Motif IL_66584.4 Version IL_66584.4 of this group appears in releases 3.48 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 2-11 | 3-10 | 4-9 | 5-8 | 6-7 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3R9W_001 | 3R9W | 0.6540 | 0 | Quadruple sheared | B | RNA301 | G | 1515||||2_455 | G | 1516||||2_455 | G | 1517||||2_455 | A | 1518||||2_455 | A | 1519||||2_455 | C | 1520||||2_455 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | ntHS | tHS | cWW |
| 2 | IL_3FTE_001 | 3FTE | 0.5621 | 0 | Quadruple sheared | D+C | RNA (22-mer) | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | * | G | 1515 | G | 1516 | G | 1517 | A | 1518 | A | 1519 | C | 1520 | cWW | tSH | ntSH | tHS | cWW | |
| 3 | IL_4V9F_063 | 4V9F | 0.1238 | 1 | tSH-tSH-tHH-tHS | 0 | LSU rRNA | C | 1764 | G | 1765 | U | 1766 | A | 1767 | C | 1768 | C | 1769 | * | G | 1774 | A | 1775 | A | 1776 | A | 1778 | A | 1779 | G | 1780 | cWW | tSH | tHH | tHS | cWW | |
| 4 | IL_4Y4O_241 | 4Y4O | 0.0000 | 1 | tSH-tSH-tHH-tHS (H) | 2A | LSU rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 5 | IL_5J7L_308 | 5J7L | 0.0722 | 1 | tSH-tSH-tHH-tHS | DA | LSU rRNA | C | 1686 | G | 1687 | U | 1688 | A | 1689 | A | 1690 | C | 1691 | * | G | 1696 | G | 1697 | A | 1698 | A | 1700 | A | 1701 | G | 1702 | cWW | tSH | tHH | tHS | cWW | |
| 6 | IL_5TBW_078 | 5TBW | 0.0942 | 1 | tSH-tSH-tHH-tHS | 1 | LSU rRNA | C | 1918 | G | 1919 | U | 1920 | A | 1921 | A | 1922 | C | 1923 | * | G | 1928 | G | 1929 | A | 1930 | A | 1932 | A | 1933 | G | 1934 | cWW | tSH | tHH | tHS | cWW | |
| 7 | IL_7A0S_063 | 7A0S | 0.1157 | 1 | tSH-tSH-tHH-tHS | X | LSU rRNA | C | 1703 | G | 1704 | U | 1705 | A | 1706 | A | 1707 | C | 1708 | * | G | 1713 | A | 1714 | A | 1715 | A | 1717 | A | 1718 | G | 1719 | cWW | tSH | tHH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGGAAC*GGGAAC | 2 |
| CGUAAC*GGAGAAG | 2 |
| CGUACC*GAAGAAG | 1 |
| CGUAAC*GGAUAAG | 1 |
| CGUAAC*GAAGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GGAA*GGAA | 2 |
| GUAA*GAGAA | 2 |
| GUAC*AAGAA | 1 |
| GUAA*GAUAA | 1 |
| GUAA*AAGAA | 1 |
- Annotations
-
- tSH-tSH-tHH-tHS (4)
- Quadruple sheared (2)
- tSH-tSH-tHH-tHS (H) (1)
- Basepair signature
- cWW-tSH-tSH-tHH-tHS-cWW
- Heat map statistics
- Min 0.07 | Avg 0.31 | Max 0.68
Coloring options: